Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001878-TA|BGIBMGA001878-PA|undefined
         (503 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical p...    31   1.9  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    31   2.5  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    31   2.5  
U97003-1|AAB52270.2|  527|Caenorhabditis elegans Udp-glucuronosy...    29   7.7  
U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical p...    29   7.7  

>U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical
           protein C25H3.11 protein.
          Length = 947

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 14/97 (14%)

Query: 338 NMREVTKHVLDVLEQAGVRCWLETSSLLGAVVDGNVLVWADHVELGIYSSDI------DR 391
           N++E+ + +LDVL ++    W +++ L    +   + +  +H+ L    SD+       R
Sbjct: 531 NVKEMEEEILDVLHES----WDDSTLLRRDALLAQISLRLEHLTLRFVDSDVHDGIEQQR 586

Query: 392 VPYLQRGGTDADGFVWERATKGHYYSVSLSAINKANV 428
           V  L+  G  +    WE + K HY SV ++ +N  +V
Sbjct: 587 VLALELSGVSSR---WELSPKQHYLSVDVT-VNDMSV 619


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 322 PSYVYSDKHTPPCCLRNMREVTKHVLDVLEQAGV--RCWLETSSLLGAVVDGN 372
           P  +Y+   TPP   +N  ++ +  +   +QAGV  RC L T  ++GA  +GN
Sbjct: 411 PKQIYT---TPPQMPKNSIKINQMKIGGSKQAGVGVRCSLNTDCMIGAYCNGN 460


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 322 PSYVYSDKHTPPCCLRNMREVTKHVLDVLEQAGV--RCWLETSSLLGAVVDGN 372
           P  +Y+   TPP   +N  ++ +  +   +QAGV  RC L T  ++GA  +GN
Sbjct: 508 PKQIYT---TPPQMPKNSIKINQMKIGGSKQAGVGVRCSLNTDCMIGAYCNGN 557


>U97003-1|AAB52270.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein32 protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 45  NKRATDTESGWQKKPLSSLVTVVFRQFEEADNDVADSVLSFV-SAFPDMQVLVVCERSPY 103
           N + TD  S WQ+     L  V+   FE   +D A+    ++  +FPD + L+  + S +
Sbjct: 193 NSQVTDVMSFWQRLENYDLYHVMIPTFETIFDDEANVYRKYLGESFPDWRDLIP-DASLH 251

Query: 104 PPIELP----PTNSSYRNVKILSLDYEIDSCPYTSSPLS 138
               +P    P  S  + ++I  +  +I+S P  +   S
Sbjct: 252 FTNSIPFLDFPRPSIQKTIEIGGIAVDIESIPPVNEEFS 290


>U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical
           protein R151.4a protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 260 GPGRKVLKTLPEKQIVAEKVKEQRSTFYKKYKMKIVVGE-DGTVHEYG-CAKDTPRC 314
           GP  +V+  +  KQ+ A  + E+R  F ++ +M   VG+ D  V  YG C  +  +C
Sbjct: 18  GPNGQVIP-VAVKQLKANAIDEEREEFVREIQMMQTVGQHDNIVTMYGYCMDEQLQC 73


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,772
Number of Sequences: 27539
Number of extensions: 565160
Number of successful extensions: 1103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 5
length of query: 503
length of database: 12,573,161
effective HSP length: 84
effective length of query: 419
effective length of database: 10,259,885
effective search space: 4298891815
effective search space used: 4298891815
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)