Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001878-TA|BGIBMGA001878-PA|undefined
         (503 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   1.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 71  FEEADNDVADSVLSFVSAFPDMQVLVVCERSPYPPIELPPTNSSYRNVKILSLDYE 126
           FE     V+D+V++F  AF DM    +C+  P     + PT  +     +  +D+E
Sbjct: 467 FENQLQFVSDAVMAFAYAFRDMH-KELCDGKPGLCDAMKPTKGTELLKYLRKVDFE 521


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 76  NDVADSVLSFVSAFPDMQVLVVCERSPYPPIELPPTNSSYRNVKI 120
           ++  + V   +SA   M V ++  R   PP E  P  S Y  V I
Sbjct: 239 SESGEKVTLGISALLSMTVFLMTIRESLPPTEKTPLISLYYGVSI 283


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 62  SLVTVVFRQFEEADNDVADSVLSFVSAFP 90
           +L T +FR       D+   V SF  AFP
Sbjct: 268 NLETSLFRPLSSEATDLRMGVASFCKAFP 296


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,967
Number of Sequences: 429
Number of extensions: 6900
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 503
length of database: 140,377
effective HSP length: 61
effective length of query: 442
effective length of database: 114,208
effective search space: 50479936
effective search space used: 50479936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)