GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001878-TA|BGIBMGA001878-PA|undefined
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    30   0.65 
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   8.0  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    27   8.0  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   8.0  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 399 GTDADGFVWERATKGHYYSVSLSAINKANVLILPFTSQNGTMWPADWVLAHQREFPERHL 458
           G + +G  +     GH++        K +++     S +   WP  W   H  +   +HL
Sbjct: 118 GINLNGAYYTAQAAGHHFKKQ----GKGSLIFTASMSGHIANWPQQWASYHATKAAVKHL 173

Query: 459 HPLAQI---PFAYVQAPAPNDAHAFLDLKLGPNAVEKYKK 495
                +   PFA V + +P      L L    N  +K+K+
Sbjct: 174 ARALAVEWAPFARVNSVSPGYIDTDLTLYADENLRKKWKE 213


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 155 RVKPRVLHQAVIEANANPLHVIAIGIGF 182
           +V P ++HQA+ E  A+PL  +   + F
Sbjct: 576 KVTPGLIHQAISEMTASPLQKVLRNLSF 603


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 102 PYPPIELPPTNSSYRNVKILSLDYEID 128
           P PP+  P  +SS R  K +  +Y++D
Sbjct: 171 PAPPMPTPQASSSQRKQKSIEPEYDLD 197


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 73  EADNDVADSVLSFVSAFPDMQVLVVCERSPYPPIELPPTNSSYRNVKILSLDYE 126
           E++N   D V SF     D   L+  E  P P   LP T SSY+N+   SL  E
Sbjct: 196 ESENKKDDIVESFPKYPVDAHKLL--EPLPTPIPSLPSTPSSYQNLPSQSLTGE 247


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,597
Number of Sequences: 5004
Number of extensions: 105156
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 5
length of query: 503
length of database: 2,362,478
effective HSP length: 76
effective length of query: 427
effective length of database: 1,982,174
effective search space: 846388298
effective search space used: 846388298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)