GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001878-TA|BGIBMGA001878-PA|undefined
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1049 - 10627636-10628041,10630972-10631115,10631205-106318...    31   1.6  
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524...    31   1.6  
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700...    31   2.1  
07_03_1036 - 23430643-23431311,23431441-23431668                       30   4.9  
10_01_0156 + 1771224-1772099                                           29   6.5  
03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816           29   8.6  
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777...    29   8.6  

>08_01_1049 -
           10627636-10628041,10630972-10631115,10631205-10631869,
           10632709-10633110
          Length = 538

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 255 LYHTFGPGRKVLKTLPEKQIVAEKVKEQRSTFYKKYKMKIVVGEDGTVHEYGCAKD 310
           +  T  P   VL+T+ E++I+ +  K      ++KY  KIV G       Y C  D
Sbjct: 357 IIETSTPLTPVLRTVREQKIIVQAGKTSDGYRWRKYGQKIVKGNPNPRSYYRCTHD 412


>06_01_0719 +
           5239238-5239635,5239735-5239945,5240379-5240454,
           5240573-5240675,5241089-5241157,5241318-5241354,
           5241445-5241519,5241598-5241649,5241752-5241796,
           5241994-5242080,5242348-5242445
          Length = 416

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 147 TLFVPDSVRVKPRVLHQAVIEANANPLHVIAIGIGFHEIKCQRI 190
           T+F  D++  K  +   A +E +++P   + +G+GF  +K  R+
Sbjct: 175 TIFQGDAIEPKTGIKFPAFLEDDSSPSTTVLVGMGFKGVKVMRV 218


>02_04_0513 -
           23569212-23569675,23569759-23569801,23569888-23570000,
           23570099-23570158,23570472-23570541,23570887-23570951,
           23571548-23571685,23571764-23573015
          Length = 734

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 307 CAKDTPRCFPTVKGKPSYVYSDKHTPPCCLRNMR---EVTKHVLDVLEQ 352
           C + T    PT   KP   + +K +   CL ++    EV  H++D+L+Q
Sbjct: 299 CVRPTESVRPTESVKPKMTFEEKESFGNCLASLSEDPEVPSHIIDLLQQ 347


>07_03_1036 - 23430643-23431311,23431441-23431668
          Length = 298

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 75  DNDVADSVLSFVSAFPDMQVLVVCERSPYPPIELPPTNSSYRNVKILSLDYEIDSC--PY 132
           DN  A  +L F+   P++  L V   +P  P    PT S  R  KI   D+++D    P+
Sbjct: 131 DNPSASCLLPFLRGLPNLPPLRVSSSAPVTPPLSSPTAS--RPPKIRKPDWDVDPFRHPF 188

Query: 133 --TSSPLSP 139
              S+P SP
Sbjct: 189 FAVSAPASP 197


>10_01_0156 + 1771224-1772099
          Length = 291

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 406 VWERATKGHYYSVSLSAINKANVLILPFTSQNGTM 440
           +W+      +  V +SAI  AN   LP  S NGTM
Sbjct: 179 IWDPNKTYDHMGVDISAIESANTTSLPSYSLNGTM 213


>03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816
          Length = 392

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 398 GGTDADGFVWERATKGHY---YSVSLSAINKA 426
           GG+  DG VW+ A K H    YSV+++  N+A
Sbjct: 24  GGSVGDGLVWDVALKAHASGDYSVAVAQANEA 55


>02_05_0943 +
           32976990-32976996,32977119-32977464,32977586-32977796,
           32977997-32978072,32978175-32978277,32978601-32978669,
           32978785-32978821,32978904-32978978,32979052-32979103,
           32979188-32979232,32979342-32979442
          Length = 373

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 152 DSVRVKPRVLHQAVIEANANPLHVIAIGIGFHEIKCQRI 190
           D+   K  +    ++E N+NP   + +G+GF  ++  R+
Sbjct: 165 DATEPKTGIKFPTLLEDNSNPTSEVLVGMGFRSMRIMRV 203


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,285
Number of Sequences: 37544
Number of extensions: 656353
Number of successful extensions: 1443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 7
length of query: 503
length of database: 14,793,348
effective HSP length: 85
effective length of query: 418
effective length of database: 11,602,108
effective search space: 4849681144
effective search space used: 4849681144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)