Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001878-TA|BGIBMGA001878-PA|undefined
(503 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13810.1 68417.m02140 disease resistance family protein / LRR... 33 0.58
At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein si... 32 0.77
At1g71390.1 68414.m08243 disease resistance family protein / LRR... 31 2.4
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 30 3.1
At2g34790.1 68415.m04272 FAD-binding domain-containing protein s... 30 3.1
At4g13210.1 68417.m02054 pectate lyase family protein similar to... 29 5.4
At5g26760.2 68418.m03189 expressed protein 29 7.2
At5g26760.1 68418.m03188 expressed protein 29 7.2
At1g77580.2 68414.m09032 myosin heavy chain-related low similari... 29 7.2
At1g77580.1 68414.m09033 myosin heavy chain-related low similari... 29 7.2
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont... 29 9.5
At2g17036.1 68415.m01966 F-box family protein ; similar to SKP1... 29 9.5
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ... 29 9.5
>At4g13810.1 68417.m02140 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 741
Score = 32.7 bits (71), Expect = 0.58
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 53 SGWQKKPLSSLVTVVFRQFEEADNDVADSVLSFVSAFPDMQVLVVCERSPYPPIELPPTN 112
SG K L + + F E DN + D+ S++ P++Q+LV+ Y PI P +
Sbjct: 431 SGELPKSLINCSDIEFLNVE--DNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDS 488
Query: 113 SSYRNVKILSL 123
S+ ++I +
Sbjct: 489 LSFSRLRIFDI 499
>At5g56590.1 68418.m07063 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 506
Score = 32.3 bits (70), Expect = 0.77
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 125 YEIDSCPYTSSPLSPFNIETEYTLFVPDSVRVKPR--VLHQAVIEANANPLHVIAIGIGF 182
+ ID PY + SP N+ +Y LF S + P +L++ + +A + L+ + F
Sbjct: 196 FMIDLYPYYAYRDSPNNVSLDYVLFESSSEVIDPNTGLLYKNMFDAQVDALYYALTALNF 255
Query: 183 HEIK 186
IK
Sbjct: 256 RTIK 259
>At1g71390.1 68414.m08243 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
[Lycopersicon esculentum] gi|3894391|gb|AAC78595
Length = 784
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/50 (22%), Positives = 28/50 (56%)
Query: 76 NDVADSVLSFVSAFPDMQVLVVCERSPYPPIELPPTNSSYRNVKILSLDY 125
N + D+ S++ + P +QVL++ Y P+ P + ++ ++I+ + +
Sbjct: 491 NKIKDTFPSWLGSLPSLQVLILRSNDFYGPLYHPSMSIGFQGLRIIDISH 540
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 30.3 bits (65), Expect = 3.1
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 202 TKDSTGTICDAVTGPHALLIKTEYLSKVPDPIALPFPESLYLQTYVKMAKVQVLYHTFGP 261
TKD + I AV P + L +P P + E + K + + +L F
Sbjct: 454 TKDGSEEIV-AVLQPDHSFGEISILCNIPQPYTVRVAELCRILRLDKQSFMNILEIFFHD 512
Query: 262 GRKVLKTLPEKQIVAEKVKEQRS--TFY-KKYKMKIVVGEDGTVHEYGCAKDTPRCFPTV 318
GR++L L E + ++K+ S TF+ K + ++ + + YG +
Sbjct: 513 GRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSAAF-YGDLYQL-KSLIRA 570
Query: 319 KGKPSYVYSDKHTP--PCCLRNMREVTKHVLDVLEQAGVRCWLETSSLLGAVVDGNVLVW 376
G P+ D +P R ++T +++ ++ L ++ LL A+ +GN V
Sbjct: 571 GGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGNDRVA 630
Query: 377 ADHVELG 383
A V+ G
Sbjct: 631 ALLVKEG 637
>At2g34790.1 68415.m04272 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 532
Score = 30.3 bits (65), Expect = 3.1
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 416 YSVSLSAINKANVLILPFTSQNGTMWPADWVLAHQ--REFPERHLHPLAQIPFAYVQ--- 470
Y +S I+++ + PF +NGT++ W+ Q + ERH+ + ++ ++Y++
Sbjct: 413 YGGMMSRISESEI---PFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREM-YSYMEQYV 468
Query: 471 APAPNDAHA-FLDLKLGPNAVE-KYKKLGAK 499
+ P A+ + DL LG N E ++ GAK
Sbjct: 469 SKNPRQAYVNYRDLDLGTNEGETDAREWGAK 499
>At4g13210.1 68417.m02054 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 418
Score = 29.5 bits (63), Expect = 5.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 209 ICDAVTGPHALLIKTEYLSKVPDPIALPFPESLYLQTYVKMAKVQVLYHTFGPG 262
+ DA+ G A+ I YL+ + I L +S T KM +V + Y+ FG G
Sbjct: 242 LIDAIMGSTAITISNNYLTHHNEAILLGHTDS---YTRDKMMQVTIAYNHFGEG 292
>At5g26760.2 68418.m03189 expressed protein
Length = 735
Score = 29.1 bits (62), Expect = 7.2
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 295 VVGEDGTVHEYGC---AKDTPRCFPTVKGKPSYVYSDKHTPPCCL-RNMREVTKHV---L 347
+ G++ + HE K+ PR V G S + K T CL R + V H+ +
Sbjct: 587 IYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEI---KQTIAGCLARALPRVVTHLRLPI 643
Query: 348 DVLE-QAGVRCWLETSSLLGAVVDGNVLVWADHVELGIYSSDIDRVP 393
+ E + G+ LET SL GAV V W V L + + + R+P
Sbjct: 644 AISELEKGLGSLLETMSLTGAVPSFRVKEWLVIVLLFLDALSVSRIP 690
>At5g26760.1 68418.m03188 expressed protein
Length = 430
Score = 29.1 bits (62), Expect = 7.2
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 295 VVGEDGTVHEYGC---AKDTPRCFPTVKGKPSYVYSDKHTPPCCL-RNMREVTKHV---L 347
+ G++ + HE K+ PR V G S + K T CL R + V H+ +
Sbjct: 282 IYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEI---KQTIAGCLARALPRVVTHLRLPI 338
Query: 348 DVLE-QAGVRCWLETSSLLGAVVDGNVLVWADHVELGIYSSDIDRVP 393
+ E + G+ LET SL GAV V W V L + + + R+P
Sbjct: 339 AISELEKGLGSLLETMSLTGAVPSFRVKEWLVIVLLFLDALSVSRIP 385
>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 779
Score = 29.1 bits (62), Expect = 7.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 378 DHVELGIYSSDIDRVPYLQRGGTDADGFVWERATKGHYYSVSLSAINKANVLI 430
D E I + I+R LQ T + ++E ATK S ++ K NV++
Sbjct: 144 DEQEQRIQDAVIERTQELQSSRTSLENQIFETATKSEELSQMAESVAKENVML 196
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 629
Score = 29.1 bits (62), Expect = 7.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 378 DHVELGIYSSDIDRVPYLQRGGTDADGFVWERATKGHYYSVSLSAINKANVLI 430
D E I + I+R LQ T + ++E ATK S ++ K NV++
Sbjct: 110 DEQEQRIQDAVIERTQELQSSRTSLENQIFETATKSEELSQMAESVAKENVML 162
>At2g33080.1 68415.m04056 leucine-rich repeat family protein
contains leucine rich-repeat domain Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 740
Score = 28.7 bits (61), Expect = 9.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 62 SLVTVVFRQFEEADND-VADSVLSFVSAFPDMQVLVVCERSPYPPIELPPTNS 113
SL+ +F DN+ + D+ ++ A P++QVL++ Y PI PP S
Sbjct: 473 SLLNCSSLEFLSVDNNRIKDTFPFWLKALPNLQVLILSSNKLYGPI-APPHQS 524
>At2g17036.1 68415.m01966 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 428
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 222 KTEYLSKVPDPIALPFPESLYLQTYVKMAKVQVLYHTFGPGRKVLKTLPEK 272
KTE ++K+P+ L +P ++ T +++ Q L H P R VLK + EK
Sbjct: 362 KTELVNKLPEYAKLFWPPPPWITTSHEVSGFQSLNH---PNRVVLKIILEK 409
>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 28.7 bits (61), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 229 VPDPIALPFPESLYLQTYVKMAKVQVLYHTF 259
+PD +P E L ++ Y +MA +QV+ H F
Sbjct: 117 IPDSDFIPVSEKLAVRMYEQMATLQVMDHIF 147
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,884
Number of Sequences: 28952
Number of extensions: 538494
Number of successful extensions: 1164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 13
length of query: 503
length of database: 12,070,560
effective HSP length: 84
effective length of query: 419
effective length of database: 9,638,592
effective search space: 4038570048
effective search space used: 4038570048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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