GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001877-TA|BGIBMGA001877-PA|undefined
         (859 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.65 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    26   1.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   8.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 274 DHGMTESGDHGGESKAERTAAMFAYRGAGFGGQSPD 309
           ++G  ++G+  G S       MF + G G  G  PD
Sbjct: 251 NNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHHPD 286


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 19/121 (15%)

Query: 465 NIFAS-TFVSCGLISMAICVSVCYTVFHFELLEDVHHGVILSTGLISSALTCVLVIMHWD 523
           N+FA    V  GL S+++       + HFE+     H V ++  L +SA +  +VI H+ 
Sbjct: 242 NVFAGYLLVFIGLQSLSL---TNIQLEHFEMKIKRKHNVFVNNILAASACSLFVVIFHF- 297

Query: 524 GISQRWYEGRSPIYERFSRGALMASAAVLLSNSYIIEEGAE----LSFLALSVLGTIAWN 579
                     +   E F+   +M     +++   +I  GA+    L+ + L  +G+I + 
Sbjct: 298 ----------AHPREEFNHWTVMRCVQAMIAGIVVISAGADAYPPLAAIVLGAIGSIVFY 347

Query: 580 I 580
           I
Sbjct: 348 I 348


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 498 VHHGVILSTGLISSALTCVLV 518
           V + VI  TGL+ +  TCV++
Sbjct: 58  VIYAVIFVTGLVGNVSTCVVI 78


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,161
Number of Sequences: 429
Number of extensions: 9741
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 3
length of query: 859
length of database: 140,377
effective HSP length: 64
effective length of query: 795
effective length of database: 112,921
effective search space: 89772195
effective search space used: 89772195
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)