GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001876-TA|BGIBMGA001876-PA|IPR006046|Glycoside hydrolase
family 13, IPR001917|Aminotransferase, class-II, IPR006589|Glycosyl
hydrolase, family 13, subfamily, catalytic region,
IPR006048|Alpha-amylase, C-terminal all beta,
IPR011282|2-amino-3-ketobutyrate coenzyme A ligase,
IPR013772|Alpha-amylase
         (1061 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...   600   e-173
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...   600   e-173
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...   598   e-173
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    26   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   6.3  

>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score =  600 bits (1482), Expect = e-173
 Identities = 279/492 (56%), Positives = 348/492 (70%), Gaps = 9/492 (1%)

Query: 63  LLTLATSVVAYKNPHYVTGRSVNVHLFEWKWNDIADECERFLGPRGFGGIQISPPNENVV 122
           +L LAT  +  K+PH+   R+  VHLFEWKW+DIADECERFL P+GFGG+QISPPNEN+V
Sbjct: 8   VLCLATLALGQKDPHFAADRNSIVHLFEWKWSDIADECERFLAPKGFGGVQISPPNENLV 67

Query: 123 LWTYNRPWWERYQPISYELVTRSGNERQFADMVRRCNAAGVRIYVDAVINHMTGEPPENI 182
           + + NRPWWERYQP+SY L TRSG+E   ADM+ RCNA GVRIYVD VINHMTG      
Sbjct: 68  VTSSNRPWWERYQPVSYILNTRSGDEAALADMISRCNAVGVRIYVDTVINHMTGMG--GT 125

Query: 183 GTAGNTAVYREWYYPAVPYRAEHFNWPHCVIDGSDYVNDALRVRNCELVGLKDLNQANEH 242
           GTAG+ A      YPAVPY +  F+   C ++      DA  VRNCELVGL DLNQ +++
Sbjct: 126 GTAGSQADRDGKNYPAVPYGSGDFH-DSCTVNN---YQDASNVRNCELVGLADLNQGSDY 181

Query: 243 TRNMIVNFMNKLIDLGVAGFRIDAAKHMWPEDXXXXXXXXXXXXTAHGFPSNARPYIYQE 302
            R+ I+ +MN L+DLGVAGFR+DAAKHMWP D            T HGF    +P+I+QE
Sbjct: 182 VRSKIIEYMNHLVDLGVAGFRVDAAKHMWPADLEAIYGSLKNLNTDHGFLLGQKPFIFQE 241

Query: 303 VIDYGGEAISRDEYTPIGAVTEFKAGMELSRAFRGNNQLRWLSSWGTQWGLLAHSDSLTF 362
           VID GGEAIS+ EYT  G V EF+ G+ L  AF+G NQL  L++WG +W LL   D++ F
Sbjct: 242 VIDLGGEAISKHEYTGFGTVIEFQYGLSLGNAFQGGNQLANLANWGPEWNLLDGLDAVAF 301

Query: 363 IDNHDNERXXXXXXXVLTYKEPRPYKAAIAFLLAHPYGEPQIMSSFLFWDSEIGPPMDHS 422
           IDNHDN+R       +LTYK P+PYK AIAF+LAHPYG  ++MSSF F +++ GPP D +
Sbjct: 302 IDNHDNQR--TGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSSFAFDNNDQGPPQDGA 359

Query: 423 GNIISPAINSDGTCGNGWVCQHRWRQIYSMVAFRNVAGNTDVVEWWDNGSNQIAFCRGTK 482
           GN+ISP+IN DGTCGNG+VC+HRWRQI++MV FRN    T +  WW +G+ QIAF RG K
Sbjct: 360 GNLISPSINDDGTCGNGYVCEHRWRQIFNMVGFRNAVQETGIENWWSDGNQQIAFGRGNK 419

Query: 483 AFIAFNNDRWDLNQSLQTCLPAGSYCDVISGSKIGSWCQGKTVTVQSDGRAQIQVGANDY 542
            F+AF    +DLNQ  +T LPAGSYCDVISG+     C GKT+TV  DG A I +GAN+ 
Sbjct: 420 GFVAFTIG-YDLNQHFETGLPAGSYCDVISGNAENGSCSGKTITVGGDGYADISLGANED 478

Query: 543 DMMLAIHVGPEI 554
           D ++AIHV  ++
Sbjct: 479 DGVIAIHVNAKL 490


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score =  600 bits (1481), Expect = e-173
 Identities = 280/492 (56%), Positives = 347/492 (70%), Gaps = 9/492 (1%)

Query: 63  LLTLATSVVAYKNPHYVTGRSVNVHLFEWKWNDIADECERFLGPRGFGGIQISPPNENVV 122
           +L LAT  +    PH+   R+  VHLFEWKW+DIADECERFL P+GFGG+QISPPNEN+V
Sbjct: 7   VLCLATLALGLFVPHFAADRNSIVHLFEWKWSDIADECERFLAPKGFGGVQISPPNENLV 66

Query: 123 LWTYNRPWWERYQPISYELVTRSGNERQFADMVRRCNAAGVRIYVDAVINHMTGEPPENI 182
           + + NRPWWERYQP+SY L TRSG+E   ADM+ RCNA GVRIYVD VINHMTG      
Sbjct: 67  VTSSNRPWWERYQPVSYILNTRSGDEAALADMISRCNAVGVRIYVDTVINHMTGMG--GT 124

Query: 183 GTAGNTAVYREWYYPAVPYRAEHFNWPHCVIDGSDYVNDALRVRNCELVGLKDLNQANEH 242
           GTAG+ A      YPAVPY +  F+   C ++      DA  VRNCELVGL DLNQ +++
Sbjct: 125 GTAGSQADRDGKNYPAVPYGSGDFH-DSCTVNN---YQDASNVRNCELVGLADLNQGSDY 180

Query: 243 TRNMIVNFMNKLIDLGVAGFRIDAAKHMWPEDXXXXXXXXXXXXTAHGFPSNARPYIYQE 302
            R+ I+ +MN L+DLGVAGFR+DAAKHMWP D            T HGF    +P+I+QE
Sbjct: 181 VRSKIIEYMNHLVDLGVAGFRVDAAKHMWPADLEAIYASLKNLNTDHGFLDGQKPFIFQE 240

Query: 303 VIDYGGEAISRDEYTPIGAVTEFKAGMELSRAFRGNNQLRWLSSWGTQWGLLAHSDSLTF 362
           VID GGEAIS+ EYT  G V EF+ G+ L  AF+G NQL  L++WG +W LL   D++ F
Sbjct: 241 VIDLGGEAISKHEYTGFGTVIEFQYGLSLGNAFQGGNQLANLANWGPEWNLLDGLDAVAF 300

Query: 363 IDNHDNERXXXXXXXVLTYKEPRPYKAAIAFLLAHPYGEPQIMSSFLFWDSEIGPPMDHS 422
           IDNHDN+R       +LTYK P+PYK AIAF+LAHPYG  ++MSSF F +++ GPP D +
Sbjct: 301 IDNHDNQR--TGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSSFAFDNNDQGPPQDDA 358

Query: 423 GNIISPAINSDGTCGNGWVCQHRWRQIYSMVAFRNVAGNTDVVEWWDNGSNQIAFCRGTK 482
           GN+ISP+IN DGTCGNG+VC+HRWRQI++MV FRN    T +  WW +G+ QIAF RG K
Sbjct: 359 GNLISPSINDDGTCGNGYVCEHRWRQIFNMVGFRNAVQGTGIENWWSDGNQQIAFGRGNK 418

Query: 483 AFIAFNNDRWDLNQSLQTCLPAGSYCDVISGSKIGSWCQGKTVTVQSDGRAQIQVGANDY 542
            F+AF    +DLNQ LQT LPAGSYCDVISG+     C GKT+TV  DG A I +GAN+ 
Sbjct: 419 GFVAFTIG-YDLNQHLQTGLPAGSYCDVISGNAENGSCSGKTITVGGDGYADISLGANED 477

Query: 543 DMMLAIHVGPEI 554
           D ++AIHV  ++
Sbjct: 478 DGVIAIHVNAKL 489


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score =  598 bits (1477), Expect = e-173
 Identities = 279/491 (56%), Positives = 346/491 (70%), Gaps = 9/491 (1%)

Query: 64  LTLATSVVAYKNPHYVTGRSVNVHLFEWKWNDIADECERFLGPRGFGGIQISPPNENVVL 123
           L LAT  +  K+PH+   R+  VHLFEWKW+DIAD CERFL P+GFGG+QISPPNEN+V+
Sbjct: 9   LCLATLALGQKDPHFAADRNSIVHLFEWKWSDIADVCERFLAPKGFGGVQISPPNENLVV 68

Query: 124 WTYNRPWWERYQPISYELVTRSGNERQFADMVRRCNAAGVRIYVDAVINHMTGEPPENIG 183
            + NRPWWERYQP+SY L TRSG+E   ADM+ RCNA GVRIYVD VINHMTG      G
Sbjct: 69  TSSNRPWWERYQPVSYILNTRSGDETALADMISRCNAVGVRIYVDTVINHMTGMG--GTG 126

Query: 184 TAGNTAVYREWYYPAVPYRAEHFNWPHCVIDGSDYVNDALRVRNCELVGLKDLNQANEHT 243
           TAG+ A      YPAVPY +  F+   C ++      DA  VRNCELVGL DLNQ +++ 
Sbjct: 127 TAGSQADRDGKNYPAVPYGSGDFH-DSCTVNN---YQDASNVRNCELVGLADLNQGSDYV 182

Query: 244 RNMIVNFMNKLIDLGVAGFRIDAAKHMWPEDXXXXXXXXXXXXTAHGFPSNARPYIYQEV 303
           R+ I+ +MN L+DLGVAGFR+DAAKHMWP D            T HGF    +P+I+QEV
Sbjct: 183 RSKIIEYMNHLVDLGVAGFRVDAAKHMWPADLEAIYGSLKNLNTDHGFLDGQKPFIFQEV 242

Query: 304 IDYGGEAISRDEYTPIGAVTEFKAGMELSRAFRGNNQLRWLSSWGTQWGLLAHSDSLTFI 363
           ID GGEAIS+ EYT  G V EF+ G+ L  AF+G NQL  L++WG +W LL   D++ FI
Sbjct: 243 IDLGGEAISKHEYTGFGTVIEFQYGLSLGNAFQGGNQLANLANWGPEWNLLDGLDAVAFI 302

Query: 364 DNHDNERXXXXXXXVLTYKEPRPYKAAIAFLLAHPYGEPQIMSSFLFWDSEIGPPMDHSG 423
           DNHDN+R       +LTYK P+PYK AIAF+LAHPYG  ++MSSF F +++ GPP D +G
Sbjct: 303 DNHDNQR--TGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSSFAFDNNDQGPPQDDAG 360

Query: 424 NIISPAINSDGTCGNGWVCQHRWRQIYSMVAFRNVAGNTDVVEWWDNGSNQIAFCRGTKA 483
           N+ISP+IN DGTCGNG+ C+HRWRQI++MV FRN    T +  WW +G+ QIAF RG K 
Sbjct: 361 NLISPSINDDGTCGNGYGCEHRWRQIFNMVGFRNAVQGTGIENWWSDGNQQIAFGRGNKG 420

Query: 484 FIAFNNDRWDLNQSLQTCLPAGSYCDVISGSKIGSWCQGKTVTVQSDGRAQIQVGANDYD 543
           F+AF    +DLNQ LQT LPAGSYCDVISG+     C GKT+TV  DG A I +GAN+ D
Sbjct: 421 FVAFTIG-YDLNQHLQTGLPAGSYCDVISGNAENGSCSGKTITVGGDGYADISLGANEDD 479

Query: 544 MMLAIHVGPEI 554
            ++AIHV  ++
Sbjct: 480 GVIAIHVNAKL 490


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 740 KLRRNRESNDNTVSISELENRLSQFHGRE 768
           K RRNRES  NT S S L   L+  H R+
Sbjct: 331 KKRRNRESTTNTQS-SSLSEFLTNTHKRK 358


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 110 GGIQISPPNENVVLWTYN-RPWWERYQPISYELVTRSGNERQFADMVRRCNAAGV 163
           GG     P E  ++ T + R  W R++ ++ E++      R F   V +  AAG+
Sbjct: 16  GGKSKGDPTERDLIVTLDDRDLWLRFECLTNEMIVTKNGRRMFP--VVKVTAAGL 68


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,655
Number of Sequences: 317
Number of extensions: 10725
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 5
length of query: 1061
length of database: 114,650
effective HSP length: 64
effective length of query: 997
effective length of database: 94,362
effective search space: 94078914
effective search space used: 94078914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)