GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001876-TA|BGIBMGA001876-PA|IPR006046|Glycoside hydrolase
family 13, IPR001917|Aminotransferase, class-II, IPR006589|Glycosyl
hydrolase, family 13, subfamily, catalytic region,
IPR006048|Alpha-amylase, C-terminal all beta,
IPR011282|2-amino-3-ketobutyrate coenzyme A ligase,
IPR013772|Alpha-amylase
         (1061 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...   151   4e-37
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...   133   1e-31
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    54   8e-08
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    54   1e-07
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    46   4e-05
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    38   0.007
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    37   0.017
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    37   0.017
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    33   0.28 
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    33   0.28 
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    30   1.5  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    30   1.5  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    29   2.6  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    29   3.4  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    28   6.0  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    28   7.9  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 558

 Score =  151 bits (367), Expect = 4e-37
 Identities = 107/364 (29%), Positives = 175/364 (48%), Gaps = 38/364 (10%)

Query: 682  FCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKGYKFVNLIGENNTNKL 741
            +C+N+YL +  H ++ EA  + ++ YG G    R               N+ G N  + +
Sbjct: 179  WCSNDYLNMGGHKKIREAMHQCIETYGGGAGGTR---------------NIAGHNQ-HAV 222

Query: 742  RRNRESNDNTVSISELENRLSQFHGREDTILYGSCFDANAGLFESM--LTPEDAVFSDAL 799
            R              LE  L+  H +   +++GSC+ AN     ++    P     SD +
Sbjct: 223  R--------------LEKSLADLHQKPAALVFGSCYVANDATLSTLGRKLPNCIFLSDEM 268

Query: 800  NHASIIDGIRLCKAQKYRYPHRDLTELEHLLAHSEA-RIKLIVTDGVFSMDGTVAPIKGL 858
            NHAS+I+GIR  + +K  + H DL +LE  LA     R K+I  + V+SM G VAPI  +
Sbjct: 269  NHASMINGIRNSRCEKIIFKHNDLVDLEAKLASLPLNRPKIIAFESVYSMSGNVAPISEI 328

Query: 859  RDLADKYRALLVVDDSHAXXXXXXXXXXXXXYC-GVMGAADIICSTLGKAVSGAAGGYTT 917
             DLA KY A+  +D+ HA                G++   DII  TL K+  G  GGY  
Sbjct: 329  CDLAKKYGAITFLDEVHAVGMYGPRGAGVAEETPGLLSRVDIITGTLAKSY-GCVGGYIA 387

Query: 918  GPKELVTLLRNVSRPYLFSNXXXXXXXXXSLKSLDLVERSGELRQRLRQNTTAFREGLKA 977
                LV ++R+++  ++F+          +L +++ ++ S   R++ R      ++ L  
Sbjct: 388  ASSTLVDMIRSLAPGFIFTTSLPPHVMVGALTAVEHLKVSNVEREQQRSAVRRVKQSLSE 447

Query: 978  AGLTVAGDDHPICPVMVGEASLAVDLASGML--ERGVYVVAFSYPVVPKGAARVRVQLSA 1035
             G+ V  +D  I P MVG+A LA  LAS  L  +  +YV + ++P V  G  R+R+  + 
Sbjct: 448  IGIPVLSNDTHIVPAMVGDAHLA-KLASDSLLHDHNIYVQSINFPTVSVGTERLRITPTP 506

Query: 1036 AHSS 1039
            AH++
Sbjct: 507  AHNT 510


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score =  133 bits (321), Expect = 1e-31
 Identities = 90/319 (28%), Positives = 151/319 (47%), Gaps = 19/319 (5%)

Query: 756  ELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQK 815
            E+E   + F G+   +++   F  NA +F +++ P   + SD LNH SI  G RL  A  
Sbjct: 237  EVEELTANFVGKPAALVFSQGFSTNATVFSTLMCPGSLIISDELNHTSIRFGARLSGANI 296

Query: 816  YRYPHRDLTELEHLL----------AHSEARIKLIVTDGVFSMDGTVAPIKGLRDLADKY 865
              Y H D+T+LE +L           H      L+V +G++SM+G    +  + +L ++Y
Sbjct: 297  RVYKHNDMTDLERVLREVISQGQPRTHRPYSKILVVIEGLYSMEGNFCDLPKVVELKNRY 356

Query: 866  RALLVVDDSHAXXXXXXXXXXXXXYCGV-MGAADIICSTLGKAVSGAAGGYTTGPKELVT 924
            +  L +D++H+             Y G+     DI+  T  K+  GAAGGY +    ++ 
Sbjct: 357  KFYLFIDEAHSIGAIGPRGGGICDYFGISTDHVDILMGTFTKSF-GAAGGYISATPNIIN 415

Query: 925  LLRNVSRPYLFSNXXXXXXXXXSLKS-LDLVERSG-----ELRQRLRQNTTAFREGLKAA 978
             LR  +  Y+++             S L++++ S      E  +RL  N+   R GLK  
Sbjct: 416  KLRVTNPGYVYAESMSPAVLAQIKSSFLEIMDNSPTSAGLERIERLAFNSRYIRLGLKRL 475

Query: 979  GLTVAG-DDHPICPVMVGEASLAVDLASGMLERGVYVVAFSYPVVPKGAARVRVQLSAAH 1037
            G  + G DD P+ P+++         +  ML+RG+ VV   YP  P   +RVR   SA+H
Sbjct: 476  GFIIFGNDDSPVVPLLLYNPGKINAFSHEMLKRGIAVVVVGYPACPLLTSRVRFCFSASH 535

Query: 1038 SSGDVTRAVQAFAEVAKNV 1056
            +  D+   ++A  EV + +
Sbjct: 536  NKADMDYFLRACDEVGEKL 554



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 663 TSPQDTKVRVQGAQGEFLNFCANNYLGLS-NHPEVVEAAREGLKKYGAGLSSVRFICGTQ 721
           ++  ++  ++ G     LN  + NYLG + +H        E ++KYG    S   ICGT 
Sbjct: 173 STDSNSTFKLTGDTSLALNVSSYNYLGFAQSHGPCATKVEEAMQKYGLSTCSSNAICGTY 232

Query: 722 SIHK 725
            +HK
Sbjct: 233 GLHK 236


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 18/186 (9%)

Query: 93  WNDIADECERFLGPRGFGGIQISPPNENVVLWTYNRPWWERYQPIS-YELVTRSGNERQF 151
           W  I D+ +   G  GF  I ISP  +N+   T     +  Y P   Y L    G E+  
Sbjct: 64  WRGIIDKLDYIQG-MGFTAIWISPIIKNIEGRTKYGEAYHGYWPQDLYTLNPHFGTEQDL 122

Query: 152 ADMVRRCNAAGVRIYVDAVINHMTGEPPENIGTAGNTAVYREWYYPAVPYRAEHFNWPHC 211
            D+    +  G+ + VD V+NHM    P NI    +  +YR       P+       P C
Sbjct: 123 IDLADALHDRGMYLMVDTVVNHMGSSDPRNI----DYGIYR-------PFNQSSHYHPMC 171

Query: 212 VIDGSDYVNDALRVRNCELVGLKDLNQANEHTRNMIVNFMNKLI-DLGVAGFRIDAAKHM 270
            I+    ++        E + L D++  N      + NF++  +    + G R+DA KH+
Sbjct: 172 PIEQDKPLSLEQCWIGTEDMTLPDIDTENPQIIETLYNFIHDQVKQFKIDGLRVDATKHV 231

Query: 271 ----WP 272
               WP
Sbjct: 232 RRTFWP 237


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 46/230 (20%), Positives = 95/230 (41%), Gaps = 12/230 (5%)

Query: 757 LENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQKY 816
           LE  ++ F G E  I+Y   F   + +  +     D +  D   + +I  GI++ +    
Sbjct: 177 LEKDIASFIGVERAIVYAQSFQTISSVIPAFSKRGDILVVDEACNFAIQKGIQISRTTIR 236

Query: 817 RYPHRDLTELEHLLAHSEARI---------KLIVTDGVFSMDGTVAPIKGLRDLADKYRA 867
            + H ++ +LE +L   E            + I+T+G+    G +  +  +  L  KY+ 
Sbjct: 237 YFKHNNMKDLERILQELEDDFVKHNRPLTRRFIITEGISENYGDMVDLTKIVALKKKYKY 296

Query: 868 LLVVDDSHAXXXXXXXXXXXXXYCGVMGA-ADIICSTLGKAVSGAAGGYTTGPKELVTLL 926
            L++D++ +             + GV     +II  +L  +++G  GG+  G + +V   
Sbjct: 297 RLILDETWSFGTCGRTGKGLTEHFGVPPTDVEIIIGSLTTSLAG-GGGFCAGSELMVEHQ 355

Query: 927 RNVSRPYLFSNXXXXXXXXXSLKSLDLVER-SGELRQRLRQNTTAFREGL 975
           R     Y++S          + +++ ++ R  G +   LR  +  F   L
Sbjct: 356 RLSGMAYIYSAALPASLAVAAYEAISILSRDGGSMLNDLRSKSALFHAKL 405



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 681 NFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIH 724
           NF + N+L L+ +  + E A   L++ G G        GTQ  H
Sbjct: 131 NFASFNFLDLAENKHITECAVATLRECGLGACGPPGFYGTQDKH 174


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 26/188 (13%)

Query: 93  WNDIADECERFLGPRGFGGIQISPPNENV------VLWTYNRPWWERYQPISYELVTRSG 146
           W  I ++ + ++   GF  I ISP ++N+        + Y+  W   Y+ ++       G
Sbjct: 63  WKGIENKLD-YIEDMGFNAIWISPIDKNIEGDIDGAGYAYHGYWNTDYESLNEHF----G 117

Query: 147 NERQFADMVRRCNAAGVRIYVDAVINHMTGEPPENIGTAGNTAVYREWYYPAVPYRAEHF 206
            E     ++   + AG+ + +D+++N M   PP  +  A         Y    P+  E +
Sbjct: 118 TEDDLVSLITAAHKAGIWVMLDSIVNSMALAPP--LADAD--------YSSLNPFNKESY 167

Query: 207 NWPHCVIDGSDYVNDALRVRNC---ELVGLKDLNQANEHTRNMIVNFMNKLID-LGVAGF 262
             P+C+ID  D  ++   V +C     V L DL+  +    + + +    LI      G 
Sbjct: 168 FHPYCLIDW-DITDNETNVMDCWQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGL 226

Query: 263 RIDAAKHM 270
           RIDA K M
Sbjct: 227 RIDAVKMM 234


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 93  WNDIADECERFLGPRGFGGIQISPPNENVVLWTYNRPWWERYQPISY-ELVTRSGNERQF 151
           W  I D  + ++   GF  I ISP  E +    Y+   +  ++P +Y  L    GNE   
Sbjct: 64  WQGIVDHLD-YIRDLGFTAISISPVVEQLEGPEYHGEAYHGHRPKNYYRLNPHFGNEEDL 122

Query: 152 ADMVRRCNAAGVRIYVDAVINHMTGE 177
            ++    +  G+ + VD  INH   E
Sbjct: 123 KELSDALHGKGMYLMVDVAINHTISE 148


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 13/199 (6%)

Query: 77  HYVTGRSVNVHLFEWKWNDIADECERFLGPRGFGGIQISPPNENVVLWT-YNRPWWERYQ 135
           H  T  S         W  I  + + ++   G   + ISP  +N+   T Y   +   + 
Sbjct: 42  HCTTAPSTGRMYLGGTWRGIIQKLD-YIQSLGCTAVWISPIVKNIEGVTGYGEAYHGYWA 100

Query: 136 PISYELVTRSGNERQFADMVRRCNAAGVRIYVDAVINHMTGEPPENIGTAGNTAVYREWY 195
               +L    G ++   ++V + +   +   +D V+NHM          AG++ +    Y
Sbjct: 101 EDLTQLNPHFGTKQDLTELVDQLHKRNMLCMIDIVVNHM--------AHAGDSPIDYSKY 152

Query: 196 YPAVPYRAEHFNWPHCVIDGSDYVNDALRVRNCELVGLKDLNQANEHTRNMIVNFMNKLI 255
            P       H++    + +  D  +  +     E+V L D+   ++   N   N++  LI
Sbjct: 153 APF--NSPSHYHPKRFLHNYDDTWDCEIAWLGDEVVSLMDIRTEDQEVHNFFQNWIRDLI 210

Query: 256 D-LGVAGFRIDAAKHMWPE 273
                 G RID AKH+  E
Sbjct: 211 QTYHFDGLRIDTAKHVQKE 229


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 22/189 (11%)

Query: 93  WNDIADECERFLGPRGFGGIQISPPNENVV-LWTYNRPWWERYQPISY-ELVTRSGNERQ 150
           W+ I  + +   G  GF  I ISP  +N+   +  +   +  Y    + +L    G+E  
Sbjct: 63  WSGIRSKLDYIQG-MGFNAIWISPVEKNLEGSYGSDGEAYHGYWNTDFTQLNEHFGSEDD 121

Query: 151 FADMVRRCNAAGVRIYVDAVINHMT-GEPPENIGTAGNTAVYREWYYPAVPYRAEHFNWP 209
             D++   +   + I  DA+ N M    P +NI            Y   VP+    +  P
Sbjct: 122 LIDLITDMHNRDMWIMFDALANSMAIPGPTDNIS-----------YSNLVPFNDSSYFHP 170

Query: 210 HCVIDGSDYVNDALRVRNC----ELVGLKDLNQANEHTRNMIVNFMNKLID-LGVAGFRI 264
           +C ID     N+   + +C    + V L DL+  + +  + +   ++ +++   + G RI
Sbjct: 171 YCWIDYGS--NNNTDIEDCWTGDDNVILADLDIESTNVADYLHEHIHDMVERYQIDGIRI 228

Query: 265 DAAKHMWPE 273
           DA K M PE
Sbjct: 229 DAVKQMNPE 237


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)

Query: 140 ELVTRSGNERQFADMVRRCNAAGVRIYVDAVINHMTGEPPE--NIGTAGNTAVYREWYY- 196
           ++ +R G       +++  +   +++ +D V+NH T +  E      +  T   R+WY+ 
Sbjct: 78  QIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNH-TSDQHEWFKESRSSKTNPKRDWYFW 136

Query: 197 -PA-VPYRAEHF---NWPHCVIDGSDYVNDALRVRNCEL--VGLKDLNQANEHTRNMIVN 249
            PA    + E     NW       +   ++A +     L  VG  DLN      R  + +
Sbjct: 137 KPARYNEKGERLPPNNWRSYFDTSAWEWDEATQEYYLHLWSVGQPDLNWETPKVREAVHD 196

Query: 250 FMNKLIDLGVAGFRIDA 266
            +   +D GV GFR+DA
Sbjct: 197 ILRFWLDRGVDGFRLDA 213


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 21/131 (16%)

Query: 146 GNERQFADMVRRCNAAGVRIYVDAVINHM--TGEPPENI---GTAGNTAVYREWYYPAVP 200
           G E    ++V   +   +   VD V+NHM   G  P N        +   Y  W +    
Sbjct: 106 GTEEDLKELVNAIHEKNMLCMVDIVVNHMGHAGSKPVNFLLYQPFNSGKYYHNWQF---- 161

Query: 201 YRAEHFNWPHCVIDGSDYVNDALRVRNCELVGLKDLNQANEHTRNMIVNFMNKLID-LGV 259
              ++++ PH  I G  ++ D+        V L D+       R    N+++ LI     
Sbjct: 162 --VQNYDDPHETITG--WLGDS-------HVNLPDIRTEKNEVRKFFQNWVSDLIKRYQF 210

Query: 260 AGFRIDAAKHM 270
            G R+D AKH+
Sbjct: 211 DGIRLDTAKHV 221


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 726 GYKFVNL-IGENNTNKLRRNRESNDNTVSISELE-NRLSQFHGREDTILYGSCFDANAGL 783
           GYK V + I E   +K      S  + V+ ++ + +RL++F G  DT++       + G 
Sbjct: 31  GYKVVGIDISERAISKAIDKTSSEKSNVNFNQRDFSRLNEFKGHFDTVI-------DIGC 83

Query: 784 FESMLTPEDAVFSDALNH 801
           F S+L  +   ++ +L+H
Sbjct: 84  FHSILNSDHEPYTASLSH 101


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 726 GYKFVNL-IGENNTNKLRRNRESNDNTVSISELE-NRLSQFHGREDTILYGSCFDANAGL 783
           GYK V + I E   +K      S  + V+ ++ + +RL++F G  DT++       + G 
Sbjct: 31  GYKVVGIDISERAISKAIDKTSSEKSNVNFNQRDFSRLNEFKGHFDTVI-------DIGC 83

Query: 784 FESMLTPEDAVFSDALNH 801
           F S+L  +   ++ +L+H
Sbjct: 84  FHSILNSDHEPYTASLSH 101


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 726 GYKFVNL-IGENNTNKLRRNRESNDNTVSISELE-NRLSQFHGREDTILYGSCF 777
           GYK V + I E   +K      S  + V+ ++ + +RL++F G  DT++   CF
Sbjct: 31  GYKVVGIDISERAISKAIDKTSSEKSNVNFNQRDFSRLNEFKGHFDTVIDIGCF 84


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 569 YTLRIKLRD-WSGRCSPASPTPAPPFRRQRRGAPPFVAMALRSQLLRNVLNGTQ 621
           + L I  +D W G    +   PA PF +Q+  +PPF ++  +  +L  +L G Q
Sbjct: 22  FVLSIFTKDFWIGDYDYSFLLPAIPFTKQKPKSPPFFSLNAKVPVLLALLLGFQ 75


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 636 VAKLRDVLEDRLQEIKR-AKTWKHERVLTSPQDTKVRVQGAQGE 678
           + K  ++L+   + ++R  K W H RVLT   D + RV+  + E
Sbjct: 545 IEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYRVRETEAE 588


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 480 GTKAF-IAFNNDRWDLNQSLQTCLPAGSYCDVISGSKIGSWCQGKTVTVQSDGRAQIQVG 538
           G KA  + F+N+  D   SLQT  P+ SY  ++    IGS  +  +  V +D    ++  
Sbjct: 82  GVKATDLGFSNEHDDSQDSLQTLAPSPSYVPLL--KVIGSSEEVNSNLVLTD----LETN 135

Query: 539 ANDYDMMLAIHVGPEINGSQSHNY 562
            + YD    I V   + GS +  +
Sbjct: 136 TDGYDPKFLISVRKFLMGSPNSGF 159


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,737,669
Number of Sequences: 5004
Number of extensions: 196773
Number of successful extensions: 458
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 20
length of query: 1061
length of database: 2,362,478
effective HSP length: 80
effective length of query: 981
effective length of database: 1,962,158
effective search space: 1924876998
effective search space used: 1924876998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)