Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001876-TA|BGIBMGA001876-PA|IPR006046|Glycoside hydrolase
family 13, IPR001917|Aminotransferase, class-II, IPR006589|Glycosyl
hydrolase, family 13, subfamily, catalytic region,
IPR006048|Alpha-amylase, C-terminal all beta,
IPR011282|2-amino-3-ketobutyrate coenzyme A ligase,
IPR013772|Alpha-amylase
(1061 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81050-7|CAB02856.1| 713|Caenorhabditis elegans Hypothetical pr... 382 e-105
Z70311-1|CAA94376.2| 420|Caenorhabditis elegans Hypothetical pr... 319 6e-87
U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoy... 122 2e-27
U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoy... 122 2e-27
Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical pr... 117 5e-26
U80453-3|AAV58885.1| 434|Caenorhabditis elegans Serine palmitoy... 52 2e-06
U80453-2|AAK31446.1| 458|Caenorhabditis elegans Serine palmitoy... 52 2e-06
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 34 0.62
M98552-9|AAA28210.3| 569|Caenorhabditis elegans Hypothetical pr... 32 2.5
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 31 4.3
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 31 4.3
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 31 4.3
>Z81050-7|CAB02856.1| 713|Caenorhabditis elegans Hypothetical
protein C50B6.7 protein.
Length = 713
Score = 382 bits (939), Expect = e-105
Identities = 208/504 (41%), Positives = 283/504 (56%), Gaps = 22/504 (4%)
Query: 55 VKHILLSWLL--TLATSVVAYKNPHYVTGRSVNVHLFEWKWNDIADECERFLGPRGFGGI 112
+KH+ L + ++A + Y + R VHLFEWKW D+A ECE FL G+G +
Sbjct: 2 LKHLFLFLFIKSSIAYNFYWYDKTQTLQNRQTMVHLFEWKWADVAKECENFLQYYGYGAV 61
Query: 113 QISPPNENVVLWTYNR-PWWERYQPISYELVTRSGNERQFADMVRRCNAAGVRIYVDAVI 171
Q+SPP E++ + N PWW RYQP+SY+L +RSGNE++F DMV RCN GVRI VD V+
Sbjct: 62 QVSPPMEHLKAFPNNNYPWWVRYQPVSYKLDSRSGNEQEFQDMVNRCNKVGVRIIVDIVM 121
Query: 172 NHMTG---EPPENIGTAGNTA---VYREWYYPAVPYRAEHFNWPHCV--IDGSDYVNDAL 223
NHM G + +G++G+++ + +P VPY FN P C I GSDY N A
Sbjct: 122 NHMVGIGQKSGNGVGSSGSSSFDGTHGVQSFPGVPYSLGDFNNPKCDGDIQGSDYQNSAE 181
Query: 224 RVRNCELVGLKDLNQANEHTRNMIVNFMNKLIDLGVAGFRIDAAKHMWPEDXXXXXXXXX 283
V++C LVGL DLNQA+ R IV ++NKL+D+GVAGFR DA+KHMWP+D
Sbjct: 182 HVKDCRLVGLLDLNQASATVRAKIVAYLNKLVDMGVAGFRHDASKHMWPQD-ILNILNDV 240
Query: 284 XXXTAHGFPSNARPYIYQEVIDYGGEAISRDEYTPIGAVTEFKAGMELSRAFRGNNQLRW 343
+ + SN RP+ EVID GGEA+ +Y G T F G +S A + + ++
Sbjct: 241 KDLRSDIYGSNQRPFAVHEVIDRGGEAVKCGDYFGNGRYTNFNFGAAVSAAAKQQSDWKY 300
Query: 344 LSSWGTQWGLLAHSDS--LTFIDNHDNERXXXXXXXVLTYKEPRPYKAAIAFLLAHPYGE 401
L++ G +G + D L FIDNHDN+R V+TYK+ + Y A+ F+LA PYG
Sbjct: 301 LANLGPGYGYGNNEDHDVLNFIDNHDNQR--DSSPYVVTYKDGQKYNLAVGFMLAWPYGY 358
Query: 402 PQIMSSFLFWDSEIGPPMDHSGN---IISPAINSDGTC--GNGWVCQHRWRQIYSMVAFR 456
P++MSSF F S+ PP + N SP N D TC +GWVC+HRW I M FR
Sbjct: 359 PRVMSSFAFSYSDQSPPNSGASNDYATTSPTFNGDQTCNSNSGWVCEHRWPAIRQMAKFR 418
Query: 457 NVAGNTDVVEWWDNGSNQIAFCRGTKAFIAFNNDRWDLNQSLQTCLPAGSYCDVISGSKI 516
+ T + + + +IAF R K F A N + T LPAG YCD SG
Sbjct: 419 SAVQGTAAADIVTD-TRRIAFARDGKGFFALNQQDGAWTKIFATNLPAGDYCDHFSGGLD 477
Query: 517 GSWCQGKTVTVQSDGRAQIQVGAN 540
C G +TV+ D + + V +N
Sbjct: 478 NGKCVGTKITVRDDHTSYLSVPSN 501
>Z70311-1|CAA94376.2| 420|Caenorhabditis elegans Hypothetical protein
T25B9.1 protein.
Length = 420
Score = 319 bits (784), Expect = 6e-87
Identities = 156/307 (50%), Positives = 205/307 (66%), Gaps = 5/307 (1%)
Query: 756 ELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQK 815
ELE +++QFHG EDTILY +CFDAN G+FE M +D++ SD LNHASIIDGIRL KA++
Sbjct: 116 ELEQKIAQFHGTEDTILYAACFDANGGIFEVMTGEQDSIISDELNHASIIDGIRLSKAKR 175
Query: 816 YRYPHRDLTELEHLLAHSE-ARIKLIVTDGVFSMDGTVAPIKGLRDLADKYRALLVVDDS 874
RY H DL +LE L +E +R +LIVTDGVFSMDG VAP+ + LA+KY ALL +D+
Sbjct: 176 LRYKHLDLGDLESKLKEAEDSRFRLIVTDGVFSMDGDVAPLGDITSLAEKYNALLFIDEC 235
Query: 875 HAXXXXXXXXXXXXXYCGVMGAADIICSTLGKAVSGAAGGYTTGPKELVTLLRNVSRPYL 934
HA G G D+I STLGKA+ G+ GGYTTGPK L+ LLR SRPYL
Sbjct: 236 HATGFFGKTGRGTAEAVG--GRPDVINSTLGKALGGSMGGYTTGPKPLIDLLRQRSRPYL 293
Query: 935 FSNXXXXXXXXXSLKSLDLVERSGELRQRLRQNTTAFREGLKAAGLTVAGDD--HPICPV 992
FSN S+K DL+ L+ N + FR+ + A G T+ G+D HPICPV
Sbjct: 294 FSNSLAPSIVGSSIKVFDLLMNDSSFIGSLQTNVSHFRKSMAANGFTILGNDPTHPICPV 353
Query: 993 MVGEASLAVDLASGMLERGVYVVAFSYPVVPKGAARVRVQLSAAHSSGDVTRAVQAFAEV 1052
++G+A LA +A +L+ G+YV+ FS+PVVPKG AR+RVQ+SAAHS + + ++AFA V
Sbjct: 354 LLGDAKLAATMADELLKMGIYVIGFSFPVVPKGKARIRVQISAAHSKQHIDQLIEAFATV 413
Query: 1053 AKNVGIV 1059
K + ++
Sbjct: 414 GKKLNVI 420
Score = 103 bits (246), Expect = 9e-22
Identities = 48/83 (57%), Positives = 61/83 (73%)
Query: 643 LEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNHPEVVEAARE 702
L++ L IK A T+K ERV+ Q V+V G+ +NFCANNYLGLS+HPEV+ A ++
Sbjct: 33 LKNELAGIKNAGTFKTERVIQGRQGVLVKVTGSDKPVINFCANNYLGLSSHPEVIAAGQK 92
Query: 703 GLKKYGAGLSSVRFICGTQSIHK 725
L+ +GAGLSSVRFICGTQ IHK
Sbjct: 93 ALETHGAGLSSVRFICGTQDIHK 115
>U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform a protein.
Length = 558
Score = 122 bits (293), Expect = 2e-27
Identities = 90/315 (28%), Positives = 145/315 (46%), Gaps = 19/315 (6%)
Query: 751 TVSISELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRL 810
+VS ++LE +++F G ED I + F N+ ++ + SD NHAS+I G RL
Sbjct: 218 SVSQAKLEKLVAEFLGVEDAICFSMGFATNSMNAPCLVDKHSLIISDKYNHASLILGCRL 277
Query: 811 CKAQKYRYPHRDLTELEHLL----------AHSEARIKLIVTDGVFSMDGTVAPIKGLRD 860
A + H D+ LE +L H + LI+ +G++SM+G++ + G+
Sbjct: 278 SGASTKVFEHNDMESLERILRDAIAYGNPKTHRPYKKILIIVEGIYSMEGSICNLPGIIA 337
Query: 861 LADKYRALLVVDDSHAXXXXXXXXXXXXXYCGV-MGAADIICSTLGKAVSGAAGGYTTGP 919
L KY+A L +D++H+ Y G DI+ T K+ GAAGGY G
Sbjct: 338 LKKKYQAYLYLDEAHSIGAMGKTGKGVVEYWGCDPKDVDILMGTFTKSF-GAAGGYIAGS 396
Query: 920 KELVTLLRNVSRPYLFSNXXXXXXXXXSLKSLDLV-----ERSGELR-QRLRQNTTAFRE 973
K V LR S +S+ S+ ++ + G R +RL +N+ FR
Sbjct: 397 KRTVDHLRAASPTGYYSSPMSPPIAQQIYTSMSIIMGKDGTKDGAQRIERLARNSHYFRM 456
Query: 974 GLKAAGLTVAG-DDHPICPVMVGEASLAVDLASGMLERGVYVVAFSYPVVPKGAARVRVQ 1032
LK G V G +D P+ P+++ ++ ML R + V S+P RVR
Sbjct: 457 KLKQNGFIVYGSNDSPVVPMLIYFPTMCGFYGREMLARNIGCVVVSFPATHMTEGRVRFC 516
Query: 1033 LSAAHSSGDVTRAVQ 1047
+SAAH+ + ++
Sbjct: 517 ISAAHTKEQLDEVLE 531
>U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform b protein.
Length = 586
Score = 122 bits (293), Expect = 2e-27
Identities = 90/315 (28%), Positives = 145/315 (46%), Gaps = 19/315 (6%)
Query: 751 TVSISELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRL 810
+VS ++LE +++F G ED I + F N+ ++ + SD NHAS+I G RL
Sbjct: 246 SVSQAKLEKLVAEFLGVEDAICFSMGFATNSMNAPCLVDKHSLIISDKYNHASLILGCRL 305
Query: 811 CKAQKYRYPHRDLTELEHLL----------AHSEARIKLIVTDGVFSMDGTVAPIKGLRD 860
A + H D+ LE +L H + LI+ +G++SM+G++ + G+
Sbjct: 306 SGASTKVFEHNDMESLERILRDAIAYGNPKTHRPYKKILIIVEGIYSMEGSICNLPGIIA 365
Query: 861 LADKYRALLVVDDSHAXXXXXXXXXXXXXYCGV-MGAADIICSTLGKAVSGAAGGYTTGP 919
L KY+A L +D++H+ Y G DI+ T K+ GAAGGY G
Sbjct: 366 LKKKYQAYLYLDEAHSIGAMGKTGKGVVEYWGCDPKDVDILMGTFTKSF-GAAGGYIAGS 424
Query: 920 KELVTLLRNVSRPYLFSNXXXXXXXXXSLKSLDLV-----ERSGELR-QRLRQNTTAFRE 973
K V LR S +S+ S+ ++ + G R +RL +N+ FR
Sbjct: 425 KRTVDHLRAASPTGYYSSPMSPPIAQQIYTSMSIIMGKDGTKDGAQRIERLARNSHYFRM 484
Query: 974 GLKAAGLTVAG-DDHPICPVMVGEASLAVDLASGMLERGVYVVAFSYPVVPKGAARVRVQ 1032
LK G V G +D P+ P+++ ++ ML R + V S+P RVR
Sbjct: 485 KLKQNGFIVYGSNDSPVVPMLIYFPTMCGFYGREMLARNIGCVVVSFPATHMTEGRVRFC 544
Query: 1033 LSAAHSSGDVTRAVQ 1047
+SAAH+ + ++
Sbjct: 545 ISAAHTKEQLDEVLE 559
>Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical protein
T22G5.5 protein.
Length = 512
Score = 117 bits (281), Expect = 5e-26
Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 19/332 (5%)
Query: 744 NRESNDNTVSISELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHAS 803
+R+ N V+ +E+ ++Q+ ED I++ F N+ S++ + SD LNHAS
Sbjct: 172 SRQEIGNHVAHKSVESTIAQYLNVEDAIVFPMGFATNSMNIPSLVDKGSLILSDRLNHAS 231
Query: 804 IIDGIRLCKAQKYRYPHRDLTELEHLLAHSEARIK----------LIVTDGVFSMDGTVA 853
++ G RL A + H D ++ E L + + LI+ +G++SM+GT+
Sbjct: 232 LVTGCRLSGAHTVVFRHNDASDCERKLRDALCGVSPKTGEKYNKVLIIIEGIYSMEGTIV 291
Query: 854 PIKGLRDLADKYRALLVVDDSHAXXXXXXXXXXXXXYCGVMGA-ADIICSTLGKAVSGAA 912
+ + KY L +D++H+ Y G DI+ TL K+ + +A
Sbjct: 292 NLPAFIAVKKKYNCYLFLDEAHSIGAVGPSGRGVAEYWGCNPRDIDIMMGTLTKSFA-SA 350
Query: 913 GGYTTGPKELVTLLRNVSRPYLFSNX------XXXXXXXXSLKSLDLVERSGELRQRLRQ 966
GGY G K+++ +R S + + D + + +L +
Sbjct: 351 GGYMGGSKKVIDHIRRYSAGTCYGVTMSPPLIAQVERAVLIMSGKDGTDIGRQKAIQLLE 410
Query: 967 NTTAFREGLKAAGLTVAG-DDHPICPVMVGEASLAVDLASGMLERGVYVVAFSYPVVPKG 1025
N+ FR+ L+ G V G +D P+ P+M + V+ + ML+ + +VA YP P
Sbjct: 411 NSRYFRKELRKRGFLVYGNNDSPVVPLMTFYITKVVEFSRRMLKHNIGIVAVGYPATPLL 470
Query: 1026 AARVRVQLSAAHSSGDVTRAVQAFAEVAKNVG 1057
ARVR LSA H+ + ++A +V G
Sbjct: 471 EARVRFCLSADHTKEHLDYILEAVEQVGMETG 502
>U80453-3|AAV58885.1| 434|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 1, isoform b protein.
Length = 434
Score = 52.0 bits (119), Expect = 2e-06
Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 13/223 (5%)
Query: 756 ELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQK 815
+LE L++F G E+ +LY F + + D +F D + +I G++ +++
Sbjct: 111 DLEKELAKFMGCEEAVLYSYGFATVSSAIPAYAKKGDVIFVDEGVNFAIQKGLQASRSRV 170
Query: 816 YRYPHRDLTELEHLLAHSEARIK-----------LIVTDGVFSMDGTVAPIKGLRDLADK 864
+ H D+ LE LL E R K IV +G++ + P+ + + +
Sbjct: 171 EYFKHNDMEHLERLLLEQEQRDKKDPKKAKSVRRFIVVEGLYVNYADLCPLPKIIEFKWR 230
Query: 865 YRALLVVDDSHAXXXXXXXXXXXXXYCGV-MGAADIICSTLGKAVSGAAGGYTTGPKELV 923
++ + +D+S + + V M D++ ++L A++ + GG+ G +V
Sbjct: 231 FKVRVFIDESWSFGVIGKTGRGVTEHFNVPMEDVDMVMASLENALA-STGGFCVGRSYVV 289
Query: 924 TLLRNVSRPYLFSNXXXXXXXXXSLKSLDLVERSGELRQRLRQ 966
R Y FS + +++ +++ Q++ +
Sbjct: 290 GHQRLSGLGYCFSASLPPLLATAASEAISIIDEEPSRVQKVTE 332
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 678 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIH 724
++LN + N+L + + A++ + KYG G R GT +H
Sbjct: 63 KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVH 109
>U80453-2|AAK31446.1| 458|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 1, isoform a protein.
Length = 458
Score = 52.0 bits (119), Expect = 2e-06
Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 13/223 (5%)
Query: 756 ELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQK 815
+LE L++F G E+ +LY F + + D +F D + +I G++ +++
Sbjct: 135 DLEKELAKFMGCEEAVLYSYGFATVSSAIPAYAKKGDVIFVDEGVNFAIQKGLQASRSRV 194
Query: 816 YRYPHRDLTELEHLLAHSEARIK-----------LIVTDGVFSMDGTVAPIKGLRDLADK 864
+ H D+ LE LL E R K IV +G++ + P+ + + +
Sbjct: 195 EYFKHNDMEHLERLLLEQEQRDKKDPKKAKSVRRFIVVEGLYVNYADLCPLPKIIEFKWR 254
Query: 865 YRALLVVDDSHAXXXXXXXXXXXXXYCGV-MGAADIICSTLGKAVSGAAGGYTTGPKELV 923
++ + +D+S + + V M D++ ++L A++ + GG+ G +V
Sbjct: 255 FKVRVFIDESWSFGVIGKTGRGVTEHFNVPMEDVDMVMASLENALA-STGGFCVGRSYVV 313
Query: 924 TLLRNVSRPYLFSNXXXXXXXXXSLKSLDLVERSGELRQRLRQ 966
R Y FS + +++ +++ Q++ +
Sbjct: 314 GHQRLSGLGYCFSASLPPLLATAASEAISIIDEEPSRVQKVTE 356
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 678 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIH 724
++LN + N+L + + A++ + KYG G R GT +H
Sbjct: 87 KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVH 133
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 33.9 bits (74), Expect = 0.62
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 3 FQQDDATCHTARKTLNLLDEKFEGFVIPRGGDINWPPRSCDLTWLDYFLWGYVK 56
FQQD A H + + F F+ WPP S DL +DY +W ++
Sbjct: 307 FQQDGAPAHKHKNVQAWCESNFPDFIAFN----QWPPSSPDLNPMDYSVWSVLE 356
>M98552-9|AAA28210.3| 569|Caenorhabditis elegans Hypothetical
protein ZK370.8 protein.
Length = 569
Score = 31.9 bits (69), Expect = 2.5
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 804 IIDGIRLCKAQKYRYPHRDLTELEHLLAHSEARIKLIVTDGVFSMDGTVAPIKGLRDLAD 863
I+ ++LC ++ Y HR + E+E L L++ V+ M K L + A
Sbjct: 400 IVTFLKLCTSEDYADVHRRIREMEELAESRSTHFNLVLMSKVYMMTNNEESSKKLLEEAA 459
Query: 864 KYRALLVVDDSH 875
+ +V H
Sbjct: 460 RITTRYLVPSRH 471
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 31.1 bits (67), Expect = 4.3
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 3 FQQDDATCHTARKTLNLLDEKFEGFVIPRGGDINWPPRSCDLTWLDYFLWGYVKHILLSW 62
FQQD+AT H + T + F + + ++WP RS DL ++ LWG + I+ +
Sbjct: 228 FQQDNATIHVSNSTRDY-------FKLKKINLLDWPARSPDLNPIEN-LWGILVRIVYAQ 279
Query: 63 LLTLAT 68
T T
Sbjct: 280 NKTYPT 285
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 31.1 bits (67), Expect = 4.3
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 3 FQQDDATCHTARKTLNLLDEKFEGFVIPRGGDINWPPRSCDLTWLDYFLWGYVKHILLSW 62
FQQD+AT H + T + F + + ++WP RS DL ++ LWG + I+ +
Sbjct: 228 FQQDNATIHVSNSTRDY-------FKLKKINLLDWPARSPDLNPIEN-LWGILVRIVYAQ 279
Query: 63 LLTLAT 68
T T
Sbjct: 280 NKTYPT 285
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 31.1 bits (67), Expect = 4.3
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 3 FQQDDATCHTARKTLNLLDEKFEGFVIPRGGDINWPPRSCDLTWLDYFLWGYVKHILLSW 62
FQQD+AT H + T + F + + ++WP RS DL ++ LWG + I+ +
Sbjct: 358 FQQDNATIHVSNSTRDY-------FKLKKINLLDWPARSPDLNPIEN-LWGILVRIVYAQ 409
Query: 63 LLTLAT 68
T T
Sbjct: 410 NKTYPT 415
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.136 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,819,243
Number of Sequences: 27539
Number of extensions: 1095888
Number of successful extensions: 2739
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2707
Number of HSP's gapped (non-prelim): 17
length of query: 1061
length of database: 12,573,161
effective HSP length: 89
effective length of query: 972
effective length of database: 10,122,190
effective search space: 9838768680
effective search space used: 9838768680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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