GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001876-TA|BGIBMGA001876-PA|IPR006046|Glycoside hydrolase
family 13, IPR001917|Aminotransferase, class-II, IPR006589|Glycosyl
hydrolase, family 13, subfamily, catalytic region,
IPR006048|Alpha-amylase, C-terminal all beta,
IPR011282|2-amino-3-ketobutyrate coenzyme A ligase,
IPR013772|Alpha-amylase
         (1061 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.           609   e-176
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    37   0.001
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    36   0.001
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   3.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    25   4.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    25   4.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   9.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   9.9  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score =  609 bits (1503), Expect = e-176
 Identities = 276/493 (55%), Positives = 348/493 (70%), Gaps = 10/493 (2%)

Query: 58  ILLSWLLTLATSVVAYKNPHYVTGRSVNVHLFEWKWNDIADECERFLGPRGFGGIQISPP 117
           +LL  LLTLA   +A+ +PH+  G    VHLFEWKWNDIA ECE+FLGP GFGG+Q+SP 
Sbjct: 6   VLLLALLTLAAGEIAHNDPHFAPGHDAIVHLFEWKWNDIAKECEQFLGPVGFGGVQVSPV 65

Query: 118 NENVVLWTYNRPWWERYQPISYELVTRSGNERQFADMVRRCNAAGVRIYVDAVINHMTGE 177
            EN+V+    RPWWERYQPISY+ +TRSG   QF DMV RCN AGVRIYVD ++NHM+G+
Sbjct: 66  QENIVI--DKRPWWERYQPISYKWITRSGTREQFIDMVARCNKAGVRIYVDVIMNHMSGD 123

Query: 178 PPENIGTAGNTAVYREWYYPAVPYRAEHFNWPHCVIDGSDYVNDALRVRNCELVGLKDLN 237
             +  GT  + A    + YP VPY  ++F+ P C ++     ND   VRNCELVGL DL+
Sbjct: 124 RNDAHGTGNSRANTYNFDYPQVPYTVKNFH-PRCAVNN---YNDPSNVRNCELVGLHDLD 179

Query: 238 QANEHTRNMIVNFMNKLIDLGVAGFRIDAAKHMWPEDXXXXXXXXXXXXTAHGFPSNARP 297
           Q+ E+ R+ +V+F+N L+ +GVAGFR+DAAKHMWP D              HGFP++A+P
Sbjct: 180 QSQEYVRSKLVDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYSRVRNLNRTHGFPNDAQP 239

Query: 298 YIYQEVIDYGGEAISRDEYTPIGAVTEFKAGMELSRAFRGNNQLRWLSSWGTQWGLLAHS 357
           YI+QEVIDYG EAIS+ EY  IGAV EFK   E+S AFRGNN L+WL +WG QWG L   
Sbjct: 240 YIFQEVIDYGNEAISKREYNGIGAVIEFKYSYEISNAFRGNNNLKWLVNWGEQWGFLPSK 299

Query: 358 DSLTFIDNHDNERXXXXXXXVLTYKEPRPYKAAIAFLLAHPYGEPQIMSSFLFWDSEIGP 417
           DSL F+DNHD +R       +LTYK  + YK A+AF+L+HP+G P+IMSSF F   + GP
Sbjct: 300 DSLVFVDNHDTQR---DNPQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFDFQSKDQGP 356

Query: 418 PMDHSGNIISPAINSDGTCGNGWVCQHRWRQIYSMVAFRNVAGNTDVVEWWDNGSNQIAF 477
           P D +GNI+SP+I+ D  C NGW+C+HRWRQIY+MV FRN+   T +  WWDNGSNQIAF
Sbjct: 357 PNDGNGNILSPSIH-DNICSNGWICEHRWRQIYNMVRFRNLVKGTKIDNWWDNGSNQIAF 415

Query: 478 CRGTKAFIAFNNDRWDLNQSLQTCLPAGSYCDVISGSKIGSWCQGKTVTVQSDGRAQIQV 537
            RG   F+AFN D++DL ++L+ CLP G YCDVISG+     C GK VTV SDG A I++
Sbjct: 416 SRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANIEI 475

Query: 538 GANDYDMMLAIHV 550
           GA + D +LAIHV
Sbjct: 476 GAGEEDGVLAIHV 488


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 235 DLNQANEHTRNMIVNFMNKLIDLGVAGFRIDAAKHMW 271
           DLN  N   R  + N M   +D G+ GFRIDA  H++
Sbjct: 200 DLNYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLF 236


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 146 GNERQFADMVRRCNAAGVRIYVDAVINHMTGEPPENIGTAGNTAVYREWYY-----PAVP 200
           G    F  +VRR  + G+++ +D V NH + E P    +      Y E+Y          
Sbjct: 97  GTLADFDRLVRRAKSLGLKVILDFVPNHSSHEHPWFKKSVQRIKPYDEYYVWRDARIVNG 156

Query: 201 YRAEHFNWPHCVIDGSDYVNDALRVRNCE--LVGLKDLNQANEHTRNMIVNFMNKLIDLG 258
            R    NW       +   N+  +         G  DLN  +      + N +   ++ G
Sbjct: 157 TRQPPNNWLSVFWGSAWQWNEERKQYYLHQFATGQPDLNYRSAALDQEMKNVLTFWMNRG 216

Query: 259 VAGFRIDAAKHMWPE 273
           V GFRIDA  HM+ +
Sbjct: 217 VDGFRIDAINHMFED 231


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 893 VMGAADIICSTLGKAVSGAAGGYTTGPKELVT 924
           V+    II ++  K   G   G TTGP E+VT
Sbjct: 381 VLSRIGIILASPLKREGGPPTGATTGPNEIVT 412


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 207 NWPHCVIDGSDYVNDALRVR----NCELVGLKDLNQANEHTRNMIVNFM 251
           N+  C++D     N+   ++    +    G    N+  +HT N +VN++
Sbjct: 42  NYIKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKHTANKVVNYL 90


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 207 NWPHCVIDGSDYVNDALRVR----NCELVGLKDLNQANEHTRNMIVNFM 251
           N+  C++D     N+   ++    +    G    N+  +HT N +VN++
Sbjct: 42  NYIKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKHTANKVVNYL 90


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 332 SRAFRGNNQLRWLSSWGTQWG 352
           S  + GN  +  +  WGTQ+G
Sbjct: 10  SLLYLGNESVHGIQKWGTQFG 30


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 987  HPICPVMVGEASLAVDLASGMLERGVYVVAFSYPV 1021
            H I  +       A+ +   ++ER VY V  S+P+
Sbjct: 71   HTIIEMDSNPIKTALSVCKSLIERQVYAVVVSHPL 105


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 549 HVGPEINGSQSHNYYLSCSGYTLRI----KLRDWSGRCSPASPTPAPPFRRQRRGAPPFV 604
           H  P +   +S +   +CSG+T+R       +    +C        P          P  
Sbjct: 275 HGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMT 334

Query: 605 AMALRSQLLRNVLNGT 620
             + +S ++RN LN T
Sbjct: 335 --STKSTIVRNHLNST 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,428
Number of Sequences: 429
Number of extensions: 13902
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 10
length of query: 1061
length of database: 140,377
effective HSP length: 65
effective length of query: 996
effective length of database: 112,492
effective search space: 112042032
effective search space used: 112042032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)