GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001875-TA|BGIBMGA001875-PA|undefined
         (687 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    27   0.51 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    24   4.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    24   4.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    24   4.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    24   4.8  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    24   4.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    24   4.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   6.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   8.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   8.3  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   8.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 27.1 bits (57), Expect = 0.51
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 105 PVKKNLARDSFGCLENDNSIDHV-FKAASDGMDDKNTCKLNFHEITSKLKADELKQICKE 163
           P  ++L++   GC E  +  D+   + A  G DD    + +  E+TS L  +E +     
Sbjct: 4   PFSRDLSKP--GCDEQTSRGDNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDT 61

Query: 164 LNIKVQSKQSAIKLLENYSNQ 184
             + ++  ++A+ +L N SN+
Sbjct: 62  QTLNLKHLRAAVLVLTNPSNE 82


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 278 KNRKEFEKYLDAHYIYEKYIIETDDKVKCILVETVYEMYKKIDKE 322
           K   E EK+L+     ++Y    + + K    E  Y  Y+K  KE
Sbjct: 21  KLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKE 65


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 278 KNRKEFEKYLDAHYIYEKYIIETDDKVKCILVETVYEMYKKIDKE 322
           K   E EK+L+     ++Y    + + K    E  Y  Y+K  KE
Sbjct: 21  KLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKE 65


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 278 KNRKEFEKYLDAHYIYEKYIIETDDKVKCILVETVYEMYKKIDKE 322
           K   E EK+L+     ++Y    + + K    E  Y  Y+K  KE
Sbjct: 21  KLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKE 65


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 278 KNRKEFEKYLDAHYIYEKYIIETDDKVKCILVETVYEMYKKIDKE 322
           K   E EK+L+     ++Y    + + K    E  Y  Y+K  KE
Sbjct: 21  KLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKE 65


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 278 KNRKEFEKYLDAHYIYEKYIIETDDKVKCILVETVYEMYKKIDKE 322
           K   E EK+L+     ++Y    + + K    E  Y  Y+K  KE
Sbjct: 21  KLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKE 65


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 278 KNRKEFEKYLDAHYIYEKYIIETDDKVKCILVETVYEMYKKIDKE 322
           K   E EK+L+     ++Y    + + K    E  Y  Y+K  KE
Sbjct: 21  KLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKYRKTSKE 65


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 141 CKLNFHEITSKLKADELKQICKELNIKVQSKQSAIKLLENYSNQSSISKFFIQAKENPTN 200
           C+   H  +  L  D +  + +  N     + S +   E Y ++ +  +F     E+ +N
Sbjct: 346 CRSRRHSDSCCLCLDSMNAVIRNFNESENRRNSCLGSTETYYSKHNTQQFTQYIPESSSN 405

Query: 201 --NKTR--LLEIFK-KKLGSC 216
              KT+  LLEI   +K+  C
Sbjct: 406 LQEKTKIDLLEIPPIRKISDC 426


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 504 RIITTIFFLLFW 515
           RIIT + FLLFW
Sbjct: 4   RIITALGFLLFW 15


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 353 SLKRNKSDVSSNFAVEILSVLIAQDSFRQHKKAGWYTEKALILQKYLGRHDE 404
           S+ + +SDVSS     +L VL +    R   +  ++    +I +   GRH++
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEK 56


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 353 SLKRNKSDVSSNFAVEILSVLIAQDSFRQHKKAGWYTEKALILQKYLGRHDE 404
           S+ + +SDVSS     +L VL +    R   +  ++    +I +   GRH++
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEK 56


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 155 DELKQICKELNIKVQSKQSAIKLLENYSNQSSISKFFIQAKENPTNNKTR 204
           +E K++ +E   + +  +S  +  ++Y N++S  K+   +KE   + + R
Sbjct: 257 NEKKKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRRER 306


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,239
Number of Sequences: 429
Number of extensions: 9564
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 12
length of query: 687
length of database: 140,377
effective HSP length: 62
effective length of query: 625
effective length of database: 113,779
effective search space: 71111875
effective search space used: 71111875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)