Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001875-TA|BGIBMGA001875-PA|undefined
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48360.1 68414.m05402 expressed protein ; expression supporte... 111 1e-24
At3g58110.1 68416.m06480 expressed protein 40 0.007
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 39 0.013
At4g33480.1 68417.m04755 expressed protein 34 0.36
At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE... 33 0.63
At2g22795.1 68415.m02704 expressed protein 33 0.83
At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:... 32 1.5
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 1.9
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 31 1.9
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 31 2.5
At5g51600.1 68418.m06397 microtubule associated protein (MAP65/A... 31 2.5
At3g56410.2 68416.m06274 expressed protein 31 2.5
At3g56410.1 68416.m06273 expressed protein 31 2.5
At5g15510.1 68418.m01816 expressed protein 30 4.4
At1g71820.1 68414.m08300 expressed protein 30 4.4
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 30 4.4
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 30 4.4
At2g47920.1 68415.m05991 kinase interacting family protein simil... 30 5.9
At1g43770.1 68414.m05040 PHD finger family protein contains Pfam... 30 5.9
At5g63550.1 68418.m07976 expressed protein 29 7.8
At5g25080.1 68418.m02972 expressed protein 29 7.8
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 29 7.8
At3g06490.1 68416.m00753 myb family transcription factor (MYB108... 29 7.8
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m... 29 7.8
At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5) i... 29 7.8
At2g21720.1 68415.m02584 hypothetical protein contains Pfam prof... 29 7.8
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 29 7.8
>At1g48360.1 68414.m05402 expressed protein ; expression supported
by MPSS
Length = 688
Score = 111 bits (267), Expect = 1e-24
Identities = 69/203 (33%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 481 VEDYCIWHYINNGTYTHGDHWEGRIITTIFFLLFWDIIYSKPAHAPGIFLSRYQRYPLDL 540
VE + +Y G G H E I TIF LL WDI++S PG+F +R+Q PLDL
Sbjct: 488 VEQLALQYYSGEGGGWQGIHTESSIWLTIFGLLMWDILFSD---VPGVFQTRFQTAPLDL 544
Query: 541 YCDSFYTNRKSEIDERLSSLAAGSAEDMLEAMRRVWDSRPEGELSGLTRSIEWDRIEM-- 598
+SFY RK I+ +L +A G AE++L E + R + W+R +
Sbjct: 545 ETESFYLTRKETIESQLEKVANGMAEEILIISY-------ETQRGTACRGVAWERFSLEE 597
Query: 599 ---VAGCLGPRRVGALCERLATNYGHAHSGFPDLTLW----NAHTKTITFMEVKSDSDRP 651
C+G + +LC LA +Y SG PDL +W N + +EVKS+ DR
Sbjct: 598 LRAAVACVGGMCIASLCRHLAQDYRSWCSGMPDLLVWRFKENGYEGEAKLVEVKSEKDRL 657
Query: 652 SVKQLQWMHYLQQRGLRTAFCYV 674
S +Q W+ L G C V
Sbjct: 658 SEQQRAWLLLLMDSGFNVEICKV 680
>At3g58110.1 68416.m06480 expressed protein
Length = 784
Score = 39.5 bits (88), Expect = 0.007
Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 21/256 (8%)
Query: 81 SQGSGSKDKFYSPNKKRAV-------LKKRSPVKKNLARDSFGCLENDNSIDHVFKAASD 133
+ GSGS F + N KR + +P+ K L + E +D +
Sbjct: 526 AMGSGSSSLFGNGNNKREIEHENGITYHSHNPINKRLRTEEPSWDEKPPPVDMCLDQMAY 585
Query: 134 GMDDKNTCKLNFHEITSKLKADELKQICKELNIKVQSKQSAIKLLENYSNQSSISK-FFI 192
+ +L+F E + + + Q + L ++QSK + I+ LE + K I
Sbjct: 586 WAEK---ARLSFAEKDREREQSVINQ--QYLMNELQSKTAMIQELERTKFEEQQRKDIMI 640
Query: 193 QAKENPTNNKTRLLEIFKKKLGSCYKLTEKARSX----XXXXXXXXXXGMGYSIIREKRL 248
E+ T ++E ++K L K + + R G G ++ +
Sbjct: 641 YKLESELRMMTSVVEGYRKALKITQKASREHRKRCPLRDDKQVYMDVKGSGGLVLSTTEI 700
Query: 249 ELTLLYEKINRETFPIIENRDIDDASVVFKNRKEFEKYLDAHYIYEKYIIETDDKVKCIL 308
E L ++ ++ R IDD + N+ FE++++A + + +IE +D+VK IL
Sbjct: 701 EKLRLKQEEEDRMQRVLAKRQIDDFEHNWLNK--FEEHMEAVELLNERLIENEDEVK-IL 757
Query: 309 VETVYEMYKKIDKEDM 324
ET+ E K I+ ++
Sbjct: 758 RETLSES-KNIETSEV 772
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 38.7 bits (86), Expect = 0.013
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 6/194 (3%)
Query: 4 NSAGSKKRFSLSLANGPPVKTLKNEYTNSIVNICPKAETSSRFPSPERENCKTETLIDSI 63
+S+ S S SL+ PP + + +S+ P + S PS + + + S+
Sbjct: 24 SSSLSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLS--PSSPPPPPPSSSPLSSL 81
Query: 64 KSEISPTTPRKSPKSFGSQG---SGSKDKFYSPNKKRAVLKKRSPVKKNLARDSFGCLEN 120
+SP+ P SP S S SP+ SP+ S N
Sbjct: 82 SPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTYSN 141
Query: 121 DNSIDHVFKAASDGMDDKNTCKLNFHEITSKLKADELKQICKELNIKVQSKQSAIKLLEN 180
++D++ K + + K C + S ++++ K LN+ + S +SA K ++N
Sbjct: 142 QTNLDYI-KTSCNITLYKTICYNSLSPYASTIRSNPQKLAVIALNLTLSSAKSASKFVKN 200
Query: 181 YSNQSSISKFFIQA 194
S+ +++ + A
Sbjct: 201 ISHGGGLTRLEVVA 214
>At4g33480.1 68417.m04755 expressed protein
Length = 336
Score = 33.9 bits (74), Expect = 0.36
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 12 FSLSLANGPPVKTLKNEYTNSIVNICPKAETSSRFPSPERENCKTETLIDSIKSEISPTT 71
FS SL + P TL T+ +N S SP+ T L I S ++P T
Sbjct: 3 FSYSLTSPSPNSTLSYSSTHQFLNPSSSFPVSLSVSSPKN----TRHLRLLITSALNPQT 58
Query: 72 PRKSPKSFGSQGSGSKDKFYSPNKKRAVLKKRSPVKKNLARDSFGCLENDNSIDHVFKAA 131
+ + K+ S GS DK + K++ K PV+ RDS E D+ D+ ++
Sbjct: 59 GQPTKKA--STGS---DKSSTNKKRKKKGKIAKPVEDWELRDSEDAFEEDDDADYSSSSS 113
Query: 132 S 132
S
Sbjct: 114 S 114
>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
sigma-like factor (SIG5) identical to RNA polymerase
sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
sigma-like factor [Arabidopsis thaliana] GI:4033838;
contains Pfam profiles PF04545: Sigma-70, region 4,
PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
Length = 517
Score = 33.1 bits (72), Expect = 0.63
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 405 VDDAKDAMRPQAVKISKQKTNLGNKLRIILNEIANENIKLEKDLSAEHLHKNPMDNWYKG 464
+DD D+++P+ + +Q+ L K L EIA N+ + +++ +H K M
Sbjct: 449 LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAG-NLNISREMVRKHEVKALM------ 501
Query: 465 KLKYEVCIDGIRQAI 479
KLK++ +D +RQ I
Sbjct: 502 KLKHQARVDYLRQYI 516
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 32.7 bits (71), Expect = 0.83
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Query: 50 ERENCKTETLIDSIKSEISPTTPRKSPKSFGSQGSGSKDKFYSPNKKRAVLKKRSPVKKN 109
++ KTE + DS+ + P T S + +GS S + + + S K
Sbjct: 330 DKSGIKTEEVEDSVIKSVLPNTTDNGESSSDEKSTGSSSGHESDSLEGIKSEGESMEKNE 389
Query: 110 LARDSFGCLENDNSIDHVFKAASDGMDDKNTCKLNFHEITSKLKADELKQICKELNIKVQ 169
L F ++S+ + DG + T +++ E SK K E K +E + + +
Sbjct: 390 LLEKEFNDSNGESSVTGKSTGSGDG-GSQETSEVSSQE-ESKGKESETKD-KEESSSQEE 446
Query: 170 SK--QSAIKLLENYSNQSSISKFFIQAKE 196
SK ++ K E S+Q +AKE
Sbjct: 447 SKDRETETKEKEESSSQEETMDKETEAKE 475
>At4g33200.1 68417.m04727 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]
Length = 1522
Score = 31.9 bits (69), Expect = 1.5
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 65 SEISPTTPRKSPKSFGSQGSGSKDKFYSPNKKRAVLKKRSPV----KKNLARDSFGCLE- 119
SEIS +K+ +SF + ++ + K AVL+K+ + K + R+ G +E
Sbjct: 926 SEISKL--QKTLESFSLKLDAARLATINECNKNAVLEKQLDISMKEKSAVERELNGMVEL 983
Query: 120 -NDNSIDHVFKAASDGMDDKN--------TCKLNFHEITSKLKADELKQICKELNIKVQS 170
DN++ K + + ++ KN K N + KLK E ++ C EL VQS
Sbjct: 984 KKDNAL---LKNSMNSLEKKNRVLEKELLNAKTNCNNTLQKLK--EAEKRCSELQTSVQS 1038
Query: 171 KQSAIKLLENYSNQSSISKFFIQAKE 196
+ + LEN NQ + K I + E
Sbjct: 1039 LEEKLSHLEN-ENQVLMQKTLITSPE 1063
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.5 bits (68), Expect = 1.9
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 148 ITSKLKADELKQICKELNIKVQSKQSAIKLLENYSNQSSISKFFIQAKENPTNNK-TRLL 206
+ + L+ +E ++ KE + ++++ A ++LE N+ + K ++ KEN K TR
Sbjct: 766 LKATLEQEEKERQIKERQEREENERRAKEVLEQAENERKL-KEALEQKENERRLKETREK 824
Query: 207 EIFKKKLGSCYKLTEKAR 224
E KKKL +L EK +
Sbjct: 825 EENKKKLREAIELEEKEK 842
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 31.5 bits (68), Expect = 1.9
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 154 ADELKQICKELNIKVQSKQSAIKLLENYSNQSSISKFFIQAKENPTNNKTRLLEIFKKKL 213
+DEL +E IK++ ++ ++LL+ YSN + I +F Q + +R+ E+ + KL
Sbjct: 221 SDELFHELQEEAIKLRDQKKEVELLQGYSN-NEIDEFKKQIDMSYDRQLSRITEMVETKL 279
Query: 214 GSCYKLTEK 222
K E+
Sbjct: 280 RDTAKRLEQ 288
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 31.1 bits (67), Expect = 2.5
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 15 SLANGPPVKTLKNEYTNSIVNICPKAETSSRFPSPERE-----NCKTETLIDSIKSEIS- 68
+L N PV + KN + I PK + S+ P+ + + N T IK++ S
Sbjct: 175 NLFNDLPVNS-KNREKKLVSGIMPKELSISKVPTTKSDPVTVGNNMKRTTQSPIKAKNSQ 233
Query: 69 PTTPRKSPKSFGSQGSGSKDKFYSPNKKRAVLKKRSPVKK 108
PT + S +S GS+ S SK+ + +K ++ L +S + K
Sbjct: 234 PTQLKNSQRSLGSE-SFSKNTSSTKSKTKSSLASKSSIPK 272
>At5g51600.1 68418.m06397 microtubule associated protein
(MAP65/ASE1) family protein low similarity to SP|P50275
Anaphase spindle elongation protein {Saccharomyces
cerevisiae}, protein regulating cytokinesis 1 (PRC1)
[Homo sapiens] GI:2865521; contains Pfam profile
PF03999: Microtubule associated protein (MAP65/ASE1
family)
Length = 707
Score = 31.1 bits (67), Expect = 2.5
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 88 DKFYSPNKKRAVLKKRSPVKKNLARDSFGCLENDNSIDHVFKAASDGMDDKNTCKLNFHE 147
D+ + K VLKKRS +++ + R + +D++ID A G+ D + +
Sbjct: 308 DEVKASKMKELVLKKRSELEE-ICRKTHLLPVSDSAIDQTIVAIESGIVDATMVLEHLEQ 366
Query: 148 ITSKLKADELKQICKELNIKVQSKQSA 174
SK+K + L + KE+ +V+ SA
Sbjct: 367 HISKIKEEALSR--KEILERVEKWLSA 391
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 548 NRKSEIDERLSSLAAGSAEDMLEAMRRVWDSRPEGELSGLTRSIEWDRIE 597
+ SE DER++ + +E++L V ++R + E +G T EW+ +
Sbjct: 607 SESSEEDERVAERSVSHSEELLYKKEYVSETRVQSENTGDTYEFEWEETQ 656
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 548 NRKSEIDERLSSLAAGSAEDMLEAMRRVWDSRPEGELSGLTRSIEWDRIE 597
+ SE DER++ + +E++L V ++R + E +G T EW+ +
Sbjct: 560 SESSEEDERVAERSVSHSEELLYKKEYVSETRVQSENTGDTYEFEWEETQ 609
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 30.3 bits (65), Expect = 4.4
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 39 KAETSSRFPSPERENCKTETLIDSIKSEISPTTPRKSPKSFGSQGSGSKDKFYSPNKKRA 98
KA T + S + N K ++ IS +P KSP ++ S K+ SP +A
Sbjct: 10 KAGTPVKDRSKFQSNQKISRSSENANPNISQASPSKSPLMKSAKKSAQKNPSPSPKPTQA 69
Query: 99 VLKKRSPVKK 108
V R+ +++
Sbjct: 70 VFSPRNRIRE 79
>At1g71820.1 68414.m08300 expressed protein
Length = 752
Score = 30.3 bits (65), Expect = 4.4
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 311 TVYEMYKKIDKEDMIRYTSLPEWLRRYTPPYI-FVKILGEGIQSLKRNKSDVS-SNFAVE 368
T + Y I + D ++ E + YTP + +ILGE +Q ++ N +DV A+
Sbjct: 406 TTKKWYMNILEADKVQPPKKTEEGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRIALA 465
Query: 369 ILSVLI 374
I+ V+I
Sbjct: 466 IIQVMI 471
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 4.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 39 KAETSSRFPSPERENCKTETLIDSIKSEISPTTPRKSPKSFGSQGSGSKDKFYSPNKKRA 98
K+ + SR S R ++ + S K++ S R+SP S+ G + K SP+ +R+
Sbjct: 212 KSRSRSRGRSVSRSRSRSRSRSRSPKAKSS----RRSPAKSTSRSPGPRSKSRSPSPRRS 267
Query: 99 VLKKRSPV 106
+ RSP+
Sbjct: 268 RSRSRSPL 275
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 4.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 39 KAETSSRFPSPERENCKTETLIDSIKSEISPTTPRKSPKSFGSQGSGSKDKFYSPNKKRA 98
K+ + SR S R ++ + S K++ S R+SP S+ G + K SP+ +R+
Sbjct: 212 KSRSRSRGRSVSRSRSRSRSRSRSPKAKSS----RRSPAKSTSRSPGPRSKSRSPSPRRS 267
Query: 99 VLKKRSPV 106
+ RSP+
Sbjct: 268 RSRSRSPL 275
>At2g47920.1 68415.m05991 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 225
Score = 29.9 bits (64), Expect = 5.9
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 410 DAMRPQAVKISKQKTNLGNKLRIILNEIANENIKLEKDLSAEHLHK------NPMDNWYK 463
DA+R Q + ++K + +L + L + +EN+ L++ L+ L + P++ ++
Sbjct: 153 DALRKQLLDKDEEKREVIRQLSLTLETLKDENLSLKRRLAHHSLKQRTVLEFKPLNKFF- 211
Query: 464 GKLKYEVCIDG 474
GKL Y +C DG
Sbjct: 212 GKLFYIMC-DG 221
>At1g43770.1 68414.m05040 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 371
Score = 29.9 bits (64), Expect = 5.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 9 KKRFSLSLANGPPVKTLKNEYTNSIVNICPKAETSSRFPSPERENCKTETLIDSIK 64
KK+ S+ + PPV +++ N+ E SS P+ E K + DS K
Sbjct: 164 KKKKKKSINHSPPVLAVEDHELQGTTNVVEPVEVSSSSPTKETMESKRQESSDSRK 219
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 29.5 bits (63), Expect = 7.8
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 48 SPERENCKTETLIDSIKSEI---SPTTPRKSPKSFGSQGSGSKDKFYSPNKKRAVLKKRS 104
+PE E+ +T D K E+ P+ + S K + SGSK K P+ K + +
Sbjct: 312 APEEESDHEKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPSAKGSA-RSGE 370
Query: 105 PVKKNLARDSFGCLENDNSIDHV 127
K +A+ S +DHV
Sbjct: 371 KSSKQIAK-STSSPAKKQKVDHV 392
>At5g25080.1 68418.m02972 expressed protein
Length = 217
Score = 29.5 bits (63), Expect = 7.8
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 81 SQGSGSKDKFYSPNKKRAVLKKRSPVKKNLARDSFGCLENDNSIDHVFKAASDGMDD 137
S+ S K K+ S N+K++V + AR+ G N+N + AA+DG DD
Sbjct: 158 SETSARKRKYQS-NEKQSVQSAAKDFLEKAAREIIG--HNENGLKGPLVAAADGSDD 211
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.5 bits (63), Expect = 7.8
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 58 TLIDSIKSEISPTTPRKSPKSFGSQGSGSKDKFYSPNKKRAVLKKRSPVKKNLARDSF 115
T++ + +S P R ++ + SGS+D+ + ++ R++ + RSP + + +R +
Sbjct: 119 TVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRY 176
>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
identical to transcription factor MYB108 GI:15375290
from [Arabidopsis thaliana]
Length = 323
Score = 29.5 bits (63), Expect = 7.8
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 553 IDERLSSLAAGSAEDMLEAMRRVWDSRPEGELSGLTRSIEWDRIEMVAGCLGPRRVGALC 612
+DE+ SL + ED ++ R W + + +L + R ++ C G +R G C
Sbjct: 1 MDEKGRSLKNNNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSC 60
Query: 613 ERLATNY 619
NY
Sbjct: 61 RLRWLNY 67
>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
to SP|O22218 Calcium-transporting ATPase 4, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
{Arabidopsis thaliana}
Length = 1030
Score = 29.5 bits (63), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 85 GSKDKFYSPNKKRAVLKKRSPVKKNLARDSFGCLENDNSIDHVFKAASDGMDD 137
GS+ + SP++ RA++ K + ++L D + N I V DG +D
Sbjct: 701 GSEFRDLSPHEMRAIIPKIQVMARSLPLDKHTLVSNLRKIGEVVAVTGDGTND 753
>At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5)
identical to SUVH5 [Arabidopsis thaliana] GI:13517751;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH5 (SUVH5) GI:13517750
Length = 794
Score = 29.5 bits (63), Expect = 7.8
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 47 PSPE-RENCKTETLIDSIKSEISPTTPRKSPKSFGSQGSGSKDKFYSPNKKRAVLKKRSP 105
PSPE E K+E I + K + P+ + S K G G GS K N +R L K+
Sbjct: 230 PSPEVLELEKSEVWIITDKGVVMPSPVKPSEKRNGDYGEGSMRK----NSERVALDKKRL 285
Query: 106 VKKNLARDSFGCLENDNSIDHVFKAASDGMDDKNTCKLNFHEITSKLKADE 156
K R S G L + +S S K T +L FHE K+ +E
Sbjct: 286 ASK--FRLSNGGLPSCSS-----SGDSARYKVKETMRL-FHETCKKIMQEE 328
>At2g21720.1 68415.m02584 hypothetical protein contains Pfam
profile: PF04842 plant protein of unknown function
(DUF639)
Length = 703
Score = 29.5 bits (63), Expect = 7.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 143 LNFHEITSKLKADELKQICKELNIKVQSKQSAIKLLENYSNQS 185
+N ++ +K +E + ICKE +KV K+ + LE+ NQS
Sbjct: 471 MNMDQLGDMIK-EEGEDICKEKVVKVTDKEEMLASLESAVNQS 512
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 29.5 bits (63), Expect = 7.8
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 50 ERENCKTETLIDSIKSEISPTTPRKSPKSFGSQGSGSK-DKFYSPNKKRAVLKKRSPVKK 108
+ E K E L++SIKSE+ + K+ + + S + ++ +R V++
Sbjct: 363 KEEASKLENLVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEE 422
Query: 109 NLARDSFGCLENDNSIDHVFKAASDGMDDKNTCKLNFHEITS-KLKADELKQICKELNIK 167
++ L + +A+++ + K T + E+ + + + D LK KE N K
Sbjct: 423 EKSKKDMESLTL-----ALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEK 477
Query: 168 VQSKQSAIKLLENYSNQSSISKFFIQAKENPTNNKTRLLEIFKKKLGSCYKLTEKARS 225
+ K+LE+ N+ K + + +N N E + L C K +E+ S
Sbjct: 478 YE------KMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLMGCVKKSEEENS 529
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,461,506
Number of Sequences: 28952
Number of extensions: 717606
Number of successful extensions: 2195
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2177
Number of HSP's gapped (non-prelim): 34
length of query: 687
length of database: 12,070,560
effective HSP length: 86
effective length of query: 601
effective length of database: 9,580,688
effective search space: 5757993488
effective search space used: 5757993488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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