GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001874-TA|BGIBMGA001874-PA|IPR002364|Quinone
oxidoreductase/zeta-crystallin, IPR002085|Alcohol dehydrogenase
superfamily, zinc-containing, IPR000079|High mobility group protein
HMG14 and HMG17, IPR011032|GroES-like, IPR013154|Alcohol dehydrogenase
GroES-like, IPR013149|Alcohol dehydrogenase, zinc-binding
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    65   1e-11
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    47   5e-06
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    40   8e-04
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    38   0.002
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    37   0.004
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    36   0.010
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    33   0.051
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    30   0.48 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.7  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 7/208 (3%)

Query: 10  HRGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENV-TNFKVGDQVVALPEYRAW 68
           + GLN+ D  +R G   +P   P+I G E AG +  VG+ V  +FKVGD+VV L  + A+
Sbjct: 38  YAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAY 95

Query: 69  AELVSVPAQYVYALPEGMSALDAVAITTNYVVAYLLLFEMANLTPGKSLLVHSXXXXXXX 128
           A+  +VP   V  + E +    A A     + AY L+ E   +  G +++VH+       
Sbjct: 96  AQYTNVPTTLVSKVSEKIPLKIASAALLQGLTAYTLIEEAYPVKTGDTVVVHAAAGGVGL 155

Query: 129 XXXXXXKTVENVTVFGVCSKSKHEALKTNNNNIDHLLERGSDYTSEVRKVT-PDGVDIVL 187
                 +   NV V    S +    +   N     +     D T  V   T   GVD   
Sbjct: 156 LLCQMLR-ARNVHVIATASTAAKRRIAIKNG--AEIACSYEDLTKVVADYTNGKGVDAAY 212

Query: 188 DCLCGEECNRGYSLLKPMGRYILYGSSN 215
           D +  +  +     L+  G  + +G+++
Sbjct: 213 DSVGIDTLSSSLDALRNGGTMVSFGNAS 240


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 346

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 13 LNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 60
          LN++DLI+ +G    P + P + G + AG IE+VGE+V  F+ GD VV
Sbjct: 42 LNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
          Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 39.5 bits (88), Expect = 8e-04
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 10 HRGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQV 59
          + G+   DL   QG    P K P I G E AG + +VG  VT  K+GD+V
Sbjct: 42 YTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRV 91


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
          dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 32 PFILGFECAGEIEQVGENVTNFKVGDQVVAL 62
          P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 67 PVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 25 IDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 62
          +D     P +LG E AG +E +GE V N + GD V+ L
Sbjct: 57 VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 360

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 21 RQGAI-DSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVALP 63
          ++G I D   K P ILG E AG + +VG+ V++ K GD V   P
Sbjct: 50 KEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEP 93


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 33.5 bits (73), Expect = 0.051
 Identities = 44/191 (23%), Positives = 69/191 (36%), Gaps = 12/191 (6%)

Query: 30  KTPFILGFECAGEIEQVGENVTNFKVGDQVVALPEY-RA------WAELVSVPAQYVYAL 82
           K P I G++ AG +  VG  V  F    +V     + RA       A  +    + V+ L
Sbjct: 75  KLPNIPGYDFAGRVLAVGSEVKEFSATQRVWGCQSFPRAGRQGGSCATHIVTGDKDVWHL 134

Query: 83  PEGMSALDAVAITTNYVVAYLLLFEMANLTPGKSLLVHSXXXXXXXXXXXXXKTVENVTV 142
           P+G+S  +        + A+ +L     + PG  L++               K +E   V
Sbjct: 135 PDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVGTFAVALAKALE-CEV 193

Query: 143 FGVCSKSKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDGVDIVLDCLCGEECNRGYS-L 201
             + S    +  K  +    H L+   D   E R       D V DC+      R  S  
Sbjct: 194 TTISSTENLDLCK--SLGATHTLDYKKDNLVE-RLADLGPYDFVFDCVNDNVLYRASSKF 250

Query: 202 LKPMGRYILYG 212
           +KP G +   G
Sbjct: 251 VKPDGAFFGIG 261


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 34  ILGFECAGEIEQVGENVTNFKVGDQVV 60
           ILG E  G + + G+ V N ++GD+VV
Sbjct: 94  ILGHESCGIVAEKGDEVNNLEIGDRVV 120


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 149  SKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDGVDIVLDCL 190
            S+H  L   NN+ +H+LER     SE  K+  + +D  LD L
Sbjct: 1381 SQHRRLNLVNNHKEHVLERA---MSENNKMDNEAMDGFLDKL 1419


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,273
Number of Sequences: 5004
Number of extensions: 58851
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 12
length of query: 383
length of database: 2,362,478
effective HSP length: 74
effective length of query: 309
effective length of database: 1,992,182
effective search space: 615584238
effective search space used: 615584238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)