GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001874-TA|BGIBMGA001874-PA|IPR002364|Quinone
oxidoreductase/zeta-crystallin, IPR002085|Alcohol dehydrogenase
superfamily, zinc-containing, IPR000079|High mobility group protein
HMG14 and HMG17, IPR011032|GroES-like, IPR013154|Alcohol dehydrogenase
GroES-like, IPR013149|Alcohol dehydrogenase, zinc-binding
         (383 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 278 WAQGKVKPIVDSTWALEDVGEAMQKMHD 305
           W   K+K I+D    LE+     Q  HD
Sbjct: 279 WFLHKMKNIIDYYLVLENTDHTKQLSHD 306


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 259 FQHGRGDTVRRAVHSVFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLD 315
           F  G    V + +  +  + A  K  P   S    E VG ++  +HD KN G  ++D
Sbjct: 446 FVEGYPHAVPKYIQRLKAIRATLKASPFFASH---EVVGSSLLFVHDTKNAGIWMID 499


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 259 FQHGRGDTVRRAVHSVFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLD 315
           F  G    V + +  +  + A  K  P   S    E VG ++  +HD KN G  ++D
Sbjct: 361 FVEGYPHAVPKYIQRLKAIRATLKASPFFASH---EVVGSSLLFVHDTKNAGIWMID 414


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 259 FQHGRGDTVRRAVHSVFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLD 315
           F  G    V + +  +  + A  K  P   S    E VG ++  +HD KN G  ++D
Sbjct: 680 FVEGYPHAVPKYIQRLKAIRATLKASPFFASH---EVVGSSLLFVHDTKNAGIWMID 733


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,689
Number of Sequences: 429
Number of extensions: 3293
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 383
length of database: 140,377
effective HSP length: 59
effective length of query: 324
effective length of database: 115,066
effective search space: 37281384
effective search space used: 37281384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)