GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001873-TA|BGIBMGA001873-PA|IPR011032|GroES-like
         (84 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   1.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    20   4.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 54  TGFGGLKTVKIL 65
           TG GGL+ +K+L
Sbjct: 217 TGLGGLQNIKVL 228


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
          protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 57 GGLKTVKILKKPEPTV 72
          GGL+ V  LKK  P +
Sbjct: 78 GGLQKVAALKKTNPAL 93


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8638
Number of Sequences: 317
Number of extensions: 174
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 84
length of database: 114,650
effective HSP length: 46
effective length of query: 38
effective length of database: 100,068
effective search space:  3802584
effective search space used:  3802584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.2 bits)
S2: 36 (18.6 bits)