GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001873-TA|BGIBMGA001873-PA|IPR011032|GroES-like
         (84 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    25   1.9  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    24   2.5  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    23   5.8  

>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 48 MRAVVLTGFGGLKTVKILKKPEPTVGE 74
          M+AV+  G  G++ +    KP P  GE
Sbjct: 1  MKAVIADGQNGVEVISDAPKPTPEKGE 27


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
          Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 50 AVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVK 82
          A V    GG + VK  + P    G+ EVL+ +K
Sbjct: 9  AAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIK 41


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 51 VVLTGFGGLKTVKILKKPEPTVGEGEVL 78
          VV TGFGG KT+   +K +P    GE L
Sbjct: 63 VVKTGFGG-KTIIDFEK-DPAFSNGEEL 88


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,963
Number of Sequences: 5004
Number of extensions: 2933
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 84
length of database: 2,362,478
effective HSP length: 60
effective length of query: 24
effective length of database: 2,062,238
effective search space: 49493712
effective search space used: 49493712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)