GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001873-TA|BGIBMGA001873-PA|IPR011032|GroES-like
         (84 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115...    33   0.038
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910...    33   0.038
04_03_0559 + 17118319-17118396,17119329-17119467,17119569-171196...    32   0.050
09_04_0641 + 19172370-19172459,19172539-19172680,19172951-191730...    30   0.20 
09_04_0636 + 19150966-19151037,19151150-19151291,19151404-191514...    29   0.35 
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870...    27   1.9  
09_04_0643 + 19176561-19176644,19176761-19176902,19178084-191781...    26   3.3  

>04_03_0566 +
           17209455-17209565,17210159-17210203,17211456-17211569,
           17211943-17212081,17212324-17212415,17213245-17213517
          Length = 257

 Score = 32.7 bits (71), Expect = 0.038
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 48  MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKA 83
           MRAV  TG+GG    +K ++ P P+V + EVLI+V+A
Sbjct: 74  MRAVQYTGYGGGAGALKHVEIPVPSVKKHEVLIKVEA 110


>04_03_0562 +
          17190443-17190520,17190715-17190853,17190943-17191034,
          17191681-17191989,17192817-17193506
          Length = 435

 Score = 32.7 bits (71), Expect = 0.038
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 48 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKA 83
          MRAV  +G+GG    +K ++ P P+V + EVL++V+A
Sbjct: 10 MRAVQYSGYGGGAAALKFVEIPVPSVKKDEVLVKVEA 46


>04_03_0559 +
          17118319-17118396,17119329-17119467,17119569-17119660,
          17119974-17120660
          Length = 331

 Score = 32.3 bits (70), Expect = 0.050
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 48 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKA 83
          MRAV   G+GG   T+K ++ P P++ + E+LI+++A
Sbjct: 10 MRAVQYGGYGGGAATLKFVEIPVPSLKKNEILIKIEA 46


>09_04_0641 +
          19172370-19172459,19172539-19172680,19172951-19173039,
          19173096-19173806
          Length = 343

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 48 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKA 83
          MRAV   G+GG  + +K ++ P P+  +GEVLI+++A
Sbjct: 14 MRAVQYDGYGGGAEGLKHVEVPIPSPKKGEVLIKMEA 50


>09_04_0636 +
          19150966-19151037,19151150-19151291,19151404-19151492,
          19151589-19152308
          Length = 340

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 48 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKA 83
          MRAV    +GG  + +K ++ P PT  +GEVLI+++A
Sbjct: 8  MRAVQYDKYGGGAQALKHVEVPIPTPKKGEVLIKMEA 44


>02_05_1140 +
          34386042-34386302,34386738-34386917,34386999-34387080,
          34387180-34387287,34387442-34387630,34387814-34388010
          Length = 338

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 48 MRAVVLTGFGGLKTVKILKKPE--PTVGEGEVLIRVKA 83
          MRAVV+   GG + ++     E  P  GEGEVL+ V A
Sbjct: 1  MRAVVIARAGGPEVLEERDVGEGLPPPGEGEVLVGVSA 38


>09_04_0643 +
          19176561-19176644,19176761-19176902,19178084-19178172,
          19178470-19179195
          Length = 346

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 48 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKA 83
          MRAV    +GG  + +K ++ P P   EGE+LI+++A
Sbjct: 12 MRAVQYDKYGGGPEGLKHVEVPIPAPKEGELLIKMEA 48


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,832
Number of Sequences: 37544
Number of extensions: 25154
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 7
length of query: 84
length of database: 14,793,348
effective HSP length: 63
effective length of query: 21
effective length of database: 12,428,076
effective search space: 260989596
effective search space used: 260989596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)