GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001873-TA|BGIBMGA001873-PA|IPR011032|GroES-like
         (84 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            36   0.005
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     27   2.2  

>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 48 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKA 83
          MR+VVLTG GG   +K+ K   P   +G+V+++V A
Sbjct: 39 MRSVVLTGHGGNNKIKVEKYARPKPMQGQVVVKVHA 74


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 48 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRV 81
          M+AV+ T  GG +++ I   P P + E EVLIRV
Sbjct: 28 MKAVLFTP-GGPESMYIGDAPRPKLKETEVLIRV 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,063
Number of Sequences: 59808
Number of extensions: 22530
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 84
length of database: 16,821,457
effective HSP length: 61
effective length of query: 23
effective length of database: 13,173,169
effective search space: 302982887
effective search space used: 302982887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)