GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001873-TA|BGIBMGA001873-PA|IPR011032|GroES-like
         (84 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogen...    26   3.6  
At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family...    25   8.3  

>At4g21580.1 68417.m03122 oxidoreductase, zinc-binding
          dehydrogenase family protein Pig3 Homo sapiens,
          PID:G2754812; contains Pfam zinc-binding dehydrogenase
          domain PF00107
          Length = 325

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 48 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKA 83
          M+A+V++  G  + +++    +P V + EVLIRV A
Sbjct: 1  MKAIVISEPGKPEVLQLRDVADPEVKDDEVLIRVLA 36


>At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family
           protein contains QXW lectin repeat domain, Pfam:PF00652
          Length = 317

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 53  LTGFGGLKTVKILKKPEP----TVGEGEVLI 79
           L G  G  TVK+  K EP    T+ +G+V++
Sbjct: 160 LAGLAGRATVKVYSKAEPNYNLTIRDGKVIL 190


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,231
Number of Sequences: 28952
Number of extensions: 19427
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 2
length of query: 84
length of database: 12,070,560
effective HSP length: 63
effective length of query: 21
effective length of database: 10,246,584
effective search space: 215178264
effective search space used: 215178264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)