BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001872-TA|BGIBMGA001872-PA|IPR000238|Ribosome-binding factor A (301 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704... 31 0.86 04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 30 2.0 07_01_0394 - 2979222-2979520,2979534-2979736,2980708-2980886,298... 29 3.5 05_03_0489 - 14662378-14664957 29 4.6 01_06_1012 - 33806190-33807875,33807963-33808331 29 4.6 >09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839, 7043082-7043120 Length = 388 Score = 31.5 bits (68), Expect = 0.86 Identities = 16/45 (35%), Positives = 23/45 (51%) Query: 218 RIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQ 262 R HE++P V +T EL L K Q + +QL+K D W+ Sbjct: 133 REHETSPDHVLNMTNWYELRNRLQKDQTIDKSAQRQLKKEKDHWR 177 >04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077, 34512493-34513964,34514114-34514377,34514761-34514978, 34515759-34516030,34516190-34516559,34516578-34516797, 34516819-34518931,34518941-34519193,34519269-34519401, 34520597-34521114,34521207-34522115,34522195-34522368, 34522833-34522882,34523963-34524035,34524413-34524477, 34524736-34525522,34525622-34525878,34525989-34526109, 34526315-34526956 Length = 5320 Score = 30.3 bits (65), Expect = 2.0 Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 37 MSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTSTDEETEATLNS 86 ++TGT + D + G+E KV+ T Q VH G D E L + Sbjct: 4588 INTGTEAADDVATGLEYGKVSSTELVQAVHDMLSAAGVRMDATKETLLQT 4637 >07_01_0394 - 2979222-2979520,2979534-2979736,2980708-2980886, 2980990-2981295 Length = 328 Score = 29.5 bits (63), Expect = 3.5 Identities = 11/40 (27%), Positives = 23/40 (57%) Query: 7 LTKVTHEPGKRGIRRVAMLNKMFMKHITDLMSTGTVSMDI 46 L K+T+ G GI + NK++ + + +L+ G + +D+ Sbjct: 156 LDKLTNRYGCPGIEEIESFNKLYKQKLDELIEQGEIPLDL 195 >05_03_0489 - 14662378-14664957 Length = 859 Score = 29.1 bits (62), Expect = 4.6 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 151 TKISPDIKAKIRQLEIDEPSQESPIPEMT 179 +K +P +K + + +PS SP+P MT Sbjct: 37 SKFAPSVKGNVARASYQDPSLPSPVPYMT 65 >01_06_1012 - 33806190-33807875,33807963-33808331 Length = 684 Score = 29.1 bits (62), Expect = 4.6 Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 198 RKKSKDAWSNLESESPVISYRIHESTPIKVDTVT 231 R +S+ WSNL ++ +ISY +H+ + +T Sbjct: 382 RPESRPKWSNLMAQHNLISYCLHDRATLLTKVIT 415 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.315 0.130 0.367 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,272,552 Number of Sequences: 37544 Number of extensions: 277738 Number of successful extensions: 644 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 639 Number of HSP's gapped (non-prelim): 5 length of query: 301 length of database: 14,793,348 effective HSP length: 82 effective length of query: 219 effective length of database: 11,714,740 effective search space: 2565528060 effective search space used: 2565528060 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits) S2: 60 (28.3 bits)
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