GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001872-TA|BGIBMGA001872-PA|IPR000238|Ribosome-binding
factor A
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    30   0.47 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    28   1.9  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    27   3.3  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    27   4.4  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   4.4  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    26   5.8  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   5.8  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    26   7.6  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 19/68 (27%), Positives = 31/68 (45%)

Query: 199  KKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTS 258
            K  KD+  N   +   ++  IH     K +T  +  EL+  L   Q+  NKL  QL   +
Sbjct: 1344 KALKDSEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQLDHLN 1403

Query: 259  DDWQLSDD 266
             + +L +D
Sbjct: 1404 QEIRLKED 1411


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 210 SESPVISYRIHESTPI--KVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQLSDDS 267
           S SP +S +   + P+  K D +TQNKE+    L ++ L N    Q R +    Q  D S
Sbjct: 725 SMSPFVSQQQQLNQPVSNKPDGLTQNKEVTGMPLNKEELTNPAFPQSRTSWMMPQSFDTS 784

Query: 268 GSNS 271
             N+
Sbjct: 785 SLNA 788


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 42  VSMDIIGRGIEISKVNVTSDF 62
           V+ D+ GRGI+I +VN+  ++
Sbjct: 350 VATDVFGRGIDIERVNIVINY 370


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 226 KVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQLSDDSGSN 270
           ++ T+ Q KEL+E+L K+   + +  K+ +K   +  L+ DS S+
Sbjct: 119 RLGTIRQAKELSEYLAKKP-AETRAKKEAKKQKLNKVLAADSSSS 162


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 5/61 (8%)

Query: 209 ESESPVISYRIHE-STPIKVDTVTQ-NKELAEFLLKRQILQNKLAKQLRKTSDDWQLSDD 266
           E+ + V + ++ E S P+ ++ + + ++E AE   +R++LQ + AK+ R  S+D Q S D
Sbjct: 132 ETVASVTNVQLPEISMPLWLEKILRLDEESAE---RRRVLQAERAKEHRSNSNDKQKSSD 188

Query: 267 S 267
           +
Sbjct: 189 N 189


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 209 ESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQIL-QNKLAK 252
           + +  V+  +I E T I     T NK LA   LKR+ + +N+L K
Sbjct: 32  DKKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELVK 76


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 117 RILDLDNRLLKADFGENY-TPTDPGHLLKTEFTLDTKISPDIKAKIRQLEIDEPSQES 173
           R L   +RL   D    Y     P  L+K   T+D      +++  R++ ++ P+++S
Sbjct: 254 RTLSSPSRLRMKDNDRKYLVEHSPAALIKESETIDGIDDKSLRSSTREVSVESPNEDS 311


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 249 KLAKQLRKTSDDWQLSDDSGSNS 271
           K AK L +T DDW +S+   S S
Sbjct: 107 KFAKYLSQTDDDWGVSNIKASKS 129


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,819
Number of Sequences: 5004
Number of extensions: 48975
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 9
length of query: 301
length of database: 2,362,478
effective HSP length: 72
effective length of query: 229
effective length of database: 2,002,190
effective search space: 458501510
effective search space used: 458501510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)