GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001872-TA|BGIBMGA001872-PA|IPR000238|Ribosome-binding
factor A
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704...    31   0.86 
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    30   2.0  
07_01_0394 - 2979222-2979520,2979534-2979736,2980708-2980886,298...    29   3.5  
05_03_0489 - 14662378-14664957                                         29   4.6  
01_06_1012 - 33806190-33807875,33807963-33808331                       29   4.6  

>09_02_0296 +
           7041463-7042351,7042450-7042606,7042758-7042839,
           7043082-7043120
          Length = 388

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 218 RIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQ 262
           R HE++P  V  +T   EL   L K Q +     +QL+K  D W+
Sbjct: 133 REHETSPDHVLNMTNWYELRNRLQKDQTIDKSAQRQLKKEKDHWR 177


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 37   MSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTSTDEETEATLNS 86
            ++TGT + D +  G+E  KV+ T   Q VH      G   D   E  L +
Sbjct: 4588 INTGTEAADDVATGLEYGKVSSTELVQAVHDMLSAAGVRMDATKETLLQT 4637


>07_01_0394 -
           2979222-2979520,2979534-2979736,2980708-2980886,
           2980990-2981295
          Length = 328

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 7   LTKVTHEPGKRGIRRVAMLNKMFMKHITDLMSTGTVSMDI 46
           L K+T+  G  GI  +   NK++ + + +L+  G + +D+
Sbjct: 156 LDKLTNRYGCPGIEEIESFNKLYKQKLDELIEQGEIPLDL 195


>05_03_0489 - 14662378-14664957
          Length = 859

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 151 TKISPDIKAKIRQLEIDEPSQESPIPEMT 179
           +K +P +K  + +    +PS  SP+P MT
Sbjct: 37  SKFAPSVKGNVARASYQDPSLPSPVPYMT 65


>01_06_1012 - 33806190-33807875,33807963-33808331
          Length = 684

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 198 RKKSKDAWSNLESESPVISYRIHESTPIKVDTVT 231
           R +S+  WSNL ++  +ISY +H+   +    +T
Sbjct: 382 RPESRPKWSNLMAQHNLISYCLHDRATLLTKVIT 415


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,272,552
Number of Sequences: 37544
Number of extensions: 277738
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 5
length of query: 301
length of database: 14,793,348
effective HSP length: 82
effective length of query: 219
effective length of database: 11,714,740
effective search space: 2565528060
effective search space used: 2565528060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)