GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001872-TA|BGIBMGA001872-PA|IPR000238|Ribosome-binding
factor A
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_50637| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)                   31   0.87 
SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034)                 31   0.87 
SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91)              31   0.87 
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   31   1.2  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          30   2.0  
SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_13456| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   3.5  
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)                    29   4.7  
SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)                 29   4.7  
SB_48373| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   6.1  
SB_2157| Best HMM Match : ig (HMM E-Value=9e-19)                       28   8.1  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   8.1  

>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 131 GENYTPTDPGHLLKT-EFTLDTKISPDIKAKI 161
           GE   P  P H L+T +F+LDT++S   KAKI
Sbjct: 56  GEKDPPPPPTHDLQTVQFSLDTRVSTKTKAKI 87


>SB_50637| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)
          Length = 309

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 131 GENYTPTDPGHLLKT-EFTLDTKISPDIKAKI 161
           GE   P  P H L+T +F+LDT++S   KAKI
Sbjct: 127 GEKDPPPPPTHDLQTVQFSLDTRVSTKTKAKI 158


>SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034)
          Length = 654

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 131 GENYTPTDPGHLLKT-EFTLDTKISPDIKAKI 161
           GE   P  P H L+T +F+LDT++S   KAKI
Sbjct: 86  GEKDPPPPPTHDLQTVQFSLDTRVSTKTKAKI 117


>SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91)
          Length = 567

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 131 GENYTPTDPGHLLKT-EFTLDTKISPDIKAKI 161
           GE   P  P H L+T +F+LDT++S   KAKI
Sbjct: 97  GEKDPPPPPTHDLQTVQFSLDTRVSTKTKAKI 128


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 196  TARKKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLR 255
            T++   KD    +ES SP+  Y I ES+  K    T   +      +R+  + KL   LR
Sbjct: 967  TSKNPVKDVCV-IESPSPLSEYDIQESSGTKQPKQTDQPKETRSQKRRRREKAKLYASLR 1025

Query: 256  KTSDDWQLSDDS 267
              SDD   ++DS
Sbjct: 1026 TASDDIVPANDS 1037


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 206 SNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQLSD 265
           SN++  S + S+ +  +    VD+   N      L+  Q  +N LA  + K+SD    + 
Sbjct: 599 SNVQGNSSINSFTLSHNGSRVVDSTIHNSRSMNSLVTNQHARNPLADSISKSSDQNLTTH 658

Query: 266 DSG 268
            SG
Sbjct: 659 SSG 661


>SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 211 ESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQLSDDSG 268
           +   + Y   EST I ++  ++NKE  + L    I   +  K++  + D ++ +++SG
Sbjct: 212 QGKTVLYVPSESTTINIEQASKNKEFVQRLEAAMIHWTRQIKEVLSSQDTFETAENSG 269


>SB_13456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 201 SKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLR 255
           S D+ S  ESE+  IS        ++ +TV+ NK+  E   KR+I  NK AK+ R
Sbjct: 218 STDSTSPKESEAEDISSNAKTKLSMRKNTVS-NKDKDESYWKRRIRNNKSAKKSR 271


>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1307

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 84  LNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENYTPTDPGHLL 143
           L S      + L+V+ ++    ++V +KD    R+++    + K       TP    H  
Sbjct: 605 LRSYNDGYNYLLTVIDVLSNYAWVVPLKDKTGKRLVEAFESIFKGGRQPEKTPNGRWHRT 664

Query: 144 KTEFTLDTKISPDIKAK--IRQLEIDEPSQESPI--PEMTHTIYGLDHAKI--MNRLLTA 197
           +  FT+  + +   +     R  E D    E     PE+ HT   LD  K+   + +   
Sbjct: 665 EEVFTVGQRYNNTTQKNYAYRLREYDGTWLEGRFYEPELQHTYIKLDEFKVPKWHEVAFN 724

Query: 198 RKKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKEL 236
            KK+ D ++  +  + VI         ++V   T +K++
Sbjct: 725 LKKAIDQFN--KDRATVIQQLDQRYKDVEVTIATTSKKI 761


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 121 LDNRLLKADFGENYTPTDPGHLLKTEFTLDTKISPD 156
           L  R  +AD GE  +P+ PGH++K   T +  + PD
Sbjct: 312 LKRRRREADSGE-LSPSTPGHVIKIVKTFEPTVRPD 346


>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
          Length = 498

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 212 SPVISYRIHESTPI--KVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQLSDDSGS 269
           S + +YR    TPI  K+      ++L ++L   Q+  +     L K +DDW  + D G+
Sbjct: 121 SDINNYRHISVTPIVAKIFERIVYEQLYDYLTFNQVFGHSTVTALLKATDDWAFNIDKGN 180


>SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)
          Length = 871

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 189 KIMNRLLTARKKSKDAWSNLESESPVISYRIHESTPIK--VDTVTQNKELAEFLLKRQIL 246
           K++N L T+RK +          +P+++ +I E T  +   D +++N  ++ F    + L
Sbjct: 425 KVINEL-TSRKTNNSTIKETHPVTPIVA-KIFERTVYEQFYDYLSENHLISSFQSGFRSL 482

Query: 247 QNKLAKQLRKTSDDWQLSDDSGS 269
            + +   L+ T DDW  + D G+
Sbjct: 483 HSTVTALLKAT-DDWAFNIDKGN 504


>SB_48373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 43  SMDIIGRGIEISKVNVTSDFQTVHVYWICKGTSTDEETEATLNSVAGALRHELSVLRIMG 102
           S D+  + I+ +   V  DF    + W+ KGT T   T+  L    G  +H L VLR   
Sbjct: 50  SADLAVQPIQNNSECVYFDFDPFWLNWLVKGTYTQICTKDFL----GVTKHSLGVLRTQS 105

Query: 103 Q 103
           Q
Sbjct: 106 Q 106


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 191  MNRLLTARKKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKL 250
            M+++LT R++  +   N  +E   +   IHE   +  +   +N+ LAE + + + L   L
Sbjct: 990  MHQVLTERQQECETLRNTTNE---LITSIHEKQQVYEELSEENRSLAEHVQESERLLQDL 1046

Query: 251  AKQLRKTSDDWQLSD 265
             K  R T +     D
Sbjct: 1047 RKSARLTREQGAARD 1061


>SB_2157| Best HMM Match : ig (HMM E-Value=9e-19)
          Length = 603

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 116 ARILDLDNRLLKADFGENYTPTDPGHLLKTEFTLDTKISPDIKAK--IRQLEIDEPSQES 173
           AR LDL   L +A+ G NYT      L + E+ +   +S +I  K     +E++  S E 
Sbjct: 219 ARGLDLTIMLAQANSGGNYTCLAVNRLGRAEYHIWAVLSGEINVKHIANIVEVEHISPEK 278

Query: 174 P 174
           P
Sbjct: 279 P 279


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 78   EETEATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENYTPT 137
            EET   L S    LR E+ VLR      +    +++ +   ++ D   LK  + EN    
Sbjct: 1727 EETIRRLESETARLRQEMEVLRRSASESFRA-EQELTKFTYMNHDYDNLKMKY-ENVC-K 1783

Query: 138  DPGHLLKTEFTLDTKISPDIKAKIRQLE 165
            +   LLK +F +D ++S   KAKI  LE
Sbjct: 1784 EKETLLKDKFAVDYELSA-AKAKISDLE 1810


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,695,077
Number of Sequences: 59808
Number of extensions: 347427
Number of successful extensions: 909
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 21
length of query: 301
length of database: 16,821,457
effective HSP length: 82
effective length of query: 219
effective length of database: 11,917,201
effective search space: 2609867019
effective search space used: 2609867019
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)