GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001872-TA|BGIBMGA001872-PA|IPR000238|Ribosome-binding
factor A
         (301 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    28   0.37 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   3.5  
AJ459959-1|CAD31058.1|  462|Anopheles gambiae dopachrome convers...    24   6.0  

>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 26   NKMFMKHITDLMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTSTDEETEATLN 85
            N++F+K I         ++DII  G E+  V +    Q +H  +  +  + D+  +  L 
Sbjct: 1732 NQLFLKAILGQYKQNDYNIDIIPHGHELPMVYINGKPQQIHEKYAVEMYTNDDGGDQPLI 1791

Query: 86   SVAGALRHELSV 97
             V     +EL +
Sbjct: 1792 RVYALPGNELEI 1803


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 170  SQESPIPEMTHTIYGLDHAKIMNRLLTARKKSKDAWSNLESESPVISYRIHESTPIKVDT 229
            S++  + +     Y  D+A   NRL+  R      W  L  +  ++ + +H+     +D 
Sbjct: 1905 SEQMQLQQQWEVRYNYDNA---NRLIRKRTPDGGIWQYLYDKQGILRFSLHKEHNETLDR 1961

Query: 230  VTQNKELAEFLLKRQIL 246
            V     +++  + R+ L
Sbjct: 1962 VIHFTYVSDDKVAREAL 1978


>AJ459959-1|CAD31058.1|  462|Anopheles gambiae dopachrome conversion
           enzyme protein.
          Length = 462

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 237 AEFLLKRQILQNKLAKQLRKTSDDWQLSDDSGSNS 271
           +EF +  ++L+N+ A Q      D+QL    GS S
Sbjct: 273 SEFTVSTRVLRNETASQRSWHGTDFQLLGYRGSKS 307


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,983
Number of Sequences: 2123
Number of extensions: 9254
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 4
length of query: 301
length of database: 516,269
effective HSP length: 64
effective length of query: 237
effective length of database: 380,397
effective search space: 90154089
effective search space used: 90154089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)