Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001872-TA|BGIBMGA001872-PA|IPR000238|Ribosome-binding
factor A
(301 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70680-7|CAA94572.2| 227|Caenorhabditis elegans Hypothetical pr... 42 7e-04
Z81562-8|CAB04562.1| 1304|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z81474-9|CAB03907.1| 1304|Caenorhabditis elegans Hypothetical pr... 31 0.76
AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical ... 31 0.76
AL033514-25|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical... 30 2.3
Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical pr... 29 4.1
AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical ... 29 5.4
AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical ... 29 5.4
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 7.1
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 7.1
Z81594-3|CAB76410.2| 441|Caenorhabditis elegans Hypothetical pr... 28 9.4
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 28 9.4
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 9.4
U29488-2|AAA68774.2| 422|Caenorhabditis elegans Hypothetical pr... 28 9.4
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p... 28 9.4
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 28 9.4
>Z70680-7|CAA94572.2| 227|Caenorhabditis elegans Hypothetical
protein C25G4.3 protein.
Length = 227
Score = 41.5 bits (93), Expect = 7e-04
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 20 RRVAMLNKMFMKHITDLMSTGTVSMDIIGR-GIEISKVNVTSDFQTVHVYWICKGTSTDE 78
++V L+++ + I ++++T +++GR ++I++V V F V VYW+C+G D
Sbjct: 84 KKVVQLSRILEERIAEVVATD----EMLGRLQLQITRVRVDRAFTQVSVYWMCRGDG-DS 138
Query: 79 ETEATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENY 134
E L +R + I P + F+ D ++D +AD+G +Y
Sbjct: 139 EIVDFLEESKHQIRRRVEE-SIGITCPEVKFIGDKALLMEQEMDKLFREADYGMDY 193
>Z81562-8|CAB04562.1| 1304|Caenorhabditis elegans Hypothetical
protein C18D4.1 protein.
Length = 1304
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 196 TARKKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLR 255
T+RK+S+ + SN+E++ +I + ES D + + +A+ +LK ++Q+ L
Sbjct: 763 TSRKRSEISESNIENK--MIKLAMKESLLGSEDGSSTDGAMAK-MLKMALVQSLLGSDDY 819
Query: 256 KTSDDWQLSDDSGSNS 271
+SD+ DD SNS
Sbjct: 820 SSSDEASTEDDPPSNS 835
>Z81474-9|CAB03907.1| 1304|Caenorhabditis elegans Hypothetical
protein C18D4.1 protein.
Length = 1304
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 196 TARKKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLR 255
T+RK+S+ + SN+E++ +I + ES D + + +A+ +LK ++Q+ L
Sbjct: 763 TSRKRSEISESNIENK--MIKLAMKESLLGSEDGSSTDGAMAK-MLKMALVQSLLGSDDY 819
Query: 256 KTSDDWQLSDDSGSNS 271
+SD+ DD SNS
Sbjct: 820 SSSDEASTEDDPPSNS 835
>AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical
protein Y87G2A.6 protein.
Length = 629
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 138 DPGHLLKTEFTLDTKISP-DIKA-KIRQLEIDEPSQESPIPEMTHTIYGLDHAKIMNRLL 195
DP L F D KI ++K K+ QL IDE +Q+ + YGL H + RL
Sbjct: 256 DPSGLKLATFAEDRKIRIFNVKTGKLAQL-IDETTQKYHCEAKENKNYGLQHMEWSRRLA 314
Query: 196 TARKKSKDAWSNLE 209
+ ++ KD ++L+
Sbjct: 315 SEKEMDKDKKNSLK 328
>AL033514-25|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
protein Y75B8A.24 protein.
Length = 2121
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 106 YIVFVKDMHEARIL-DLDNRLLKADFGENYTPTDPGHLLKTEFTLDTKISPDIKA 159
+++ +KD H I+ DLD ++ DFG + + G+L F D K+S ++ A
Sbjct: 1970 FLLQIKDRHNGNIMIDLDGHIIHIDFGFMFESSPGGNL---GFEPDFKLSEEMVA 2021
>Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical
protein R07B5.3 protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 155 PDIKAKIRQLEIDEPSQESPIPEMTHTIYGLDHAKIMN 192
P+I +K+ +++D P Q+ I T +YG H I N
Sbjct: 170 PNITSKVVCMQLDFPYQKGAITITTDNVYGNTHLSIGN 207
>AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical
protein Y102A11A.2b protein.
Length = 753
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 173 SPIPEMTHTIYGLDHAKIMNRLLTARKKSKDAWSNLESESPVISYRIHEST--PIKVDTV 230
SP P + + D K + ++ +S + S + E+P + Y +ST P+ + +
Sbjct: 395 SPSPSRSRYMNSRDRRKTTTIIPSSIPQSSEYKSAFQREAPAVYYTEPQSTYKPLPMSSQ 454
Query: 231 TQNKEL 236
TQN+ L
Sbjct: 455 TQNRNL 460
>AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical
protein Y102A11A.2a protein.
Length = 772
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 173 SPIPEMTHTIYGLDHAKIMNRLLTARKKSKDAWSNLESESPVISYRIHEST--PIKVDTV 230
SP P + + D K + ++ +S + S + E+P + Y +ST P+ + +
Sbjct: 395 SPSPSRSRYMNSRDRRKTTTIIPSSIPQSSEYKSAFQREAPAVYYTEPQSTYKPLPMSSQ 454
Query: 231 TQNKEL 236
TQN+ L
Sbjct: 455 TQNRNL 460
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 52 EISKVNVTSDFQTVHVYWICKGTSTDEETEATLNSVAGALRHELSVLRIMGQVPYIVFVK 111
++++V + S ++ + VY I + T + L+S+ G+L + + + P +FVK
Sbjct: 383 QVARVALESLYRLLWVYMIRNNADGNAATRSRLDSICGSLFPKGNRYIVPRDAPLNIFVK 442
Query: 112 DMH 114
+H
Sbjct: 443 IIH 445
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 52 EISKVNVTSDFQTVHVYWICKGTSTDEETEATLNSVAGALRHELSVLRIMGQVPYIVFVK 111
++++V + S ++ + VY I + T + L+S+ G+L + + + P +FVK
Sbjct: 383 QVARVALESLYRLLWVYMIRNNADGNAATRSRLDSICGSLFPKGNRYIVPRDAPLNIFVK 442
Query: 112 DMH 114
+H
Sbjct: 443 IIH 445
>Z81594-3|CAB76410.2| 441|Caenorhabditis elegans Hypothetical
protein T20F10.5 protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 116 ARILDLDN-RLLKADFGENYTPTDPGHLLKTEFTLDTKISPDIKAKIRQLEIDEPSQESP 174
+R+L + + LLKA N T T L + E T +T++ P+I ++ +D S E
Sbjct: 241 SRMLGIKHANLLKALVSSNLTKT-MSLLRRFEKTKNTELLPEIAKAVKSRSVDLKSVEFE 299
Query: 175 IPEMTHTIYGLDHAKIMNRLLTARKKSKDAWSNLESE 211
+ +HA L+ ++A+ + E
Sbjct: 300 VSTRRSAFVTREHAITQYHLVPVDNGEENAYKLVSQE 336
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 58 VTSDFQTVHVYWICKGTSTDEETEATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEAR 117
+ S Q +H G + + + + G LR S+LR++ +VP + H+ R
Sbjct: 395 IDSADQNMHQVMQAHGMAALRDNPELMGTSVGMLRRAASMLRLLVKVPKAYKIYMKHQTR 454
Query: 118 IL 119
+L
Sbjct: 455 LL 456
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 58 VTSDFQTVHVYWICKGTSTDEETEATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEAR 117
+ S Q +H G + + + + G LR S+LR++ +VP + H+ R
Sbjct: 1458 IDSADQNMHQVMQAHGMAALRDNPELMGTSVGMLRRAASMLRLLVKVPKAYKIYMKHQTR 1517
Query: 118 IL 119
+L
Sbjct: 1518 LL 1519
>U29488-2|AAA68774.2| 422|Caenorhabditis elegans Hypothetical
protein C56C10.6 protein.
Length = 422
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 186 DHAKIMNRLLTARKKSKDAWSN-LESESPVISYRIHESTPIKVDTVTQN-KELAEFLLKR 243
D+ KI L++ K K AW++ + E P IS +STP K +VT++ +L++ +K+
Sbjct: 282 DYHKIFMLLISVMSKGKFAWNDPFDWEMP-ISTTPSKSTPSK--SVTKSPAQLSKETVKK 338
Query: 244 QILQNKLAKQLRKTSD 259
+ L+K+ D
Sbjct: 339 ASREKTLSKEKTSKED 354
>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
protein C28H8.3 protein.
Length = 1714
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 204 AWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDD 260
AW + +SE+ + + E P+ + Q +A+ L K QIL+N +A + SDD
Sbjct: 6 AWDDSDSENENV---VVEEKPVILPRARQ-PSIAKSLEKVQILENSVAGSEKNASDD 58
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 177 EMTHTIYGLDHAKIMNRLLTARKKSKDAWSNLESESPVI 215
E T H K R L+ KS++ W+ L ++SP I
Sbjct: 257 ESNPTSGAFKHGKYPFRFLSGVLKSRETWTKLANDSPTI 295
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.130 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,470,121
Number of Sequences: 27539
Number of extensions: 258805
Number of successful extensions: 860
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 20
length of query: 301
length of database: 12,573,161
effective HSP length: 81
effective length of query: 220
effective length of database: 10,342,502
effective search space: 2275350440
effective search space used: 2275350440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -