GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001872-TA|BGIBMGA001872-PA|IPR000238|Ribosome-binding
factor A
         (301 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase...    38   0.006
At1g75730.1 68414.m08797 expressed protein                             35   0.058
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    32   0.41 
At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam...    31   0.72 
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam...    31   0.72 
At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase fam...    29   5.0  
At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ...    28   6.7  
At2g32310.1 68415.m03950 expressed protein                             28   6.7  
At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3...    28   8.8  
At5g40450.1 68418.m04905 expressed protein                             28   8.8  
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              28   8.8  
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    28   8.8  
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    28   8.8  
At4g07521.1 68417.m01171 hypothetical protein                          28   8.8  
At1g58210.1 68414.m06610 kinase interacting family protein simil...    28   8.8  

>At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 613

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 148 TLDTKISPDIKAKIRQLEIDEPSQESPIPEMTHTIYGLDHAKIMNRLLTARKKSKDAWSN 207
           TL+  ++PD++AK+ ++      Q    PE    +     A +++R++ + K  K+    
Sbjct: 230 TLEDHLTPDLQAKVAEMATQIFGQMLYYPESDSLLEFPSPASLLHRIIISTKPPKE---Y 286

Query: 208 LESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQLSDD 266
           LES +P++  + +  +P   D   + +E+    L+  +       +     +D + S+D
Sbjct: 287 LESRNPIVKQKDNNVSPSSEDETPRTEEIQ--TLESMLFDQDFESKSDSDQEDEEASED 343


>At1g75730.1 68414.m08797 expressed protein
          Length = 589

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 143 LKTEFTLDTKISPDIKAKIRQLEIDEPSQESPIPEMTHTIYGLDHAKIMNRLLTA-RKKS 201
           LK E + DT  SPD++      E+ +   + P   +  T  G+DHA +  +L +A +K++
Sbjct: 46  LKQEMSYDTLPSPDLEN-----EVSKKKSKLPKKNLKDT-NGVDHASVPRKLRSAMKKRN 99

Query: 202 KDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKT 257
            ++ S L S S  ++ R    T   V   +Q  E A+ ++   ++ +K  K++ +T
Sbjct: 100 LESVSKLSSVSKRLN-RFKTGTESSVKKESQEME-AKAIVTESMMISKDEKEVAET 153


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 40  GTVSMDIIGRGIEISKVNVTSDFQTVHVY--WICKGTSTDE 78
           GT SMD  GR +E  K  + S +    VY   +C G S  E
Sbjct: 194 GTTSMDCCGRNLECPKATLVSGYDPESVYDPCVCSGASRSE 234


>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 343

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 85  NSVAGALRHE-LSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENYTPTDPGHLL 143
           N +A ALR E L+V +   Q     +V DM E  +     RL++ D        +PG   
Sbjct: 219 NFIAQALRGEALTVQKPGTQTRSFCYVSDMVEGLM-----RLMEGDQTGPINIGNPGEFT 273

Query: 144 KTEF--TLDTKISPDIKAKIRQLEIDEPSQESP 174
             E   T+   I PD++ K+ +   D+P Q  P
Sbjct: 274 MVELAETVKELIKPDVEIKMVENTPDDPRQRKP 306


>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 343

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 85  NSVAGALRHE-LSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENYTPTDPGHLL 143
           N +A ALR E L+V +   Q     +V DM E  +     RL++ D        +PG   
Sbjct: 219 NFIAQALRGEALTVQKPGTQTRSFCYVSDMVEGLM-----RLMEGDQTGPINIGNPGEFT 273

Query: 144 KTEF--TLDTKISPDIKAKIRQLEIDEPSQESP 174
             E   T+   I PD++ K+ +   D+P Q  P
Sbjct: 274 MVELAETVKELIKPDVEIKMVENTPDDPRQRKP 306


>At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 341

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 85  NSVAGALRHE-LSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENYTPTDPGHLL 143
           N +A ALR E L+V +   Q     +V DM +  +     RL++ D        +PG   
Sbjct: 217 NFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLM-----RLMEGDDTGPINIGNPGEFT 271

Query: 144 KTEF--TLDTKISPDIKAKIRQLEIDEPSQESP 174
             E   T+   I+P I+ K+ +   D+P Q  P
Sbjct: 272 MVELAETVKELINPSIEIKMVENTPDDPRQRKP 304


>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 586

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 147 FTLDTKISPDIKAKIRQLEIDEPSQESPIPEMTHTI 182
           F ++ ++ P++  KI+QL +  P  E   P+++  +
Sbjct: 224 FCIEKEVPPEVAEKIKQLRLISPQDEETSPKISEKL 259


>At2g32310.1 68415.m03950 expressed protein
          Length = 325

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 130 FGENYTPTDPGHLLKTEFTLDTKISPDIKAKIRQLEIDEPSQESPIPEMTHTIYGLDHAK 189
           FGE   P  P  L   E TL   I+P  +    Q +   P  + P+    H I  LD ++
Sbjct: 21  FGE---PETPALLGDAETTLPLNINPRPEPVPSQFQYQPPPPQLPLSSSLHAIQDLDQSR 77


>At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3)
           identical to UDP-glucuronic acid decarboxylase
           [Arabidopsis thaliana] GI:14595666; contains Pfam
           profile PF01370 NAD dependent epimerase/dehydratase
           family; identical to cDNA  UDP-glucuronic acid
           decarboxylase (UXS3) GI:14595665
          Length = 342

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 85  NSVAGALRHE-LSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENYTPTDPGHLL 143
           N +A ALR E L+V +   Q     +V DM +  I     RL++ +        +PG   
Sbjct: 218 NFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLI-----RLMEGNDTGPINIGNPGEFT 272

Query: 144 KTEF--TLDTKISPDIKAKIRQLEIDEPSQESP 174
             E   T+   I+P I+ K+ +   D+P Q  P
Sbjct: 273 MVELAETVKELINPSIEIKMVENTPDDPRQRKP 305


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 12/153 (7%)

Query: 92   RHELSVLRIMGQVPYIVFVKDM--HEARILDLDNRLLK-ADFGENYTPTDPGHLLKTEFT 148
            + EL  ++ + Q   IV  ++   HE+  L  DN   K A+  E     D    +  E T
Sbjct: 1218 KEELETVKTVVQDAKIVNNEETTAHESESLKGDNHQEKNAEPVEATQNLDDAEQISREVT 1277

Query: 149  LDTKISPDIKAKIRQLEIDEPSQESPIPEMTHTIYGLDHAKIMNRLLTARKKSKDAWSNL 208
            +DT+   DI  KI      E  QE P    T TI G D        L  +++   +  + 
Sbjct: 1278 VDTEREADITEKI------EKVQEGPTVIETPTIQGEDIES--ETSLELKEEVDQSSKDT 1329

Query: 209  ESESPVISYRIHESTPIKVDTV-TQNKELAEFL 240
            E    V+   I +   +K + V T   E A  L
Sbjct: 1330 EEHEHVLERDIPQCETLKAEAVDTSTVEEAAIL 1362


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)

Query: 42  VSMDIIGRGIEISKVNVTSDF 62
           V+ D++GRGI+I +VN+  ++
Sbjct: 343 VATDLVGRGIDIERVNIVINY 363


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)

Query: 42  VSMDIIGRGIEISKVNVTSDF 62
           V+ D++GRGI+I +VN+  ++
Sbjct: 260 VATDLVGRGIDIERVNIVINY 280


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)

Query: 42  VSMDIIGRGIEISKVNVTSDF 62
           V+ D++GRGI+I +VN+  ++
Sbjct: 343 VATDLVGRGIDIERVNIVINY 363


>At4g07521.1 68417.m01171 hypothetical protein
          Length = 223

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 224 PIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKT 257
           P KVDT+T N E A F   R  ++  LAK L+ T
Sbjct: 82  PFKVDTMTLNHERARF--ARVCVEMNLAKPLKGT 113


>At1g58210.1 68414.m06610 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) {Petunia
           integrifolia}
          Length = 1246

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/74 (21%), Positives = 36/74 (48%)

Query: 138 DPGHLLKTEFTLDTKISPDIKAKIRQLEIDEPSQESPIPEMTHTIYGLDHAKIMNRLLTA 197
           D    L+ +F +  +   D+  KI+ +++DE  + + I +    + G + ++   + ++ 
Sbjct: 727 DQNKNLQNQFKVANRTVDDLSGKIQDVKMDEDVEGAGIFQELPVVSGSEDSRDDLKSVST 786

Query: 198 RKKSKDAWSNLESE 211
            K  KD  +  ESE
Sbjct: 787 EKTKKDVIAVKESE 800


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,135,946
Number of Sequences: 28952
Number of extensions: 242898
Number of successful extensions: 693
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 16
length of query: 301
length of database: 12,070,560
effective HSP length: 81
effective length of query: 220
effective length of database: 9,725,448
effective search space: 2139598560
effective search space used: 2139598560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)