GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001871-TA|BGIBMGA001871-PA|undefined
         (234 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   6.2  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 15/36 (41%), Positives = 15/36 (41%)

Query: 119 LMKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGH 154
           L KL LSA   LP   G     APPL     A   H
Sbjct: 178 LEKLRLSARPLLPPSFGIFPGGAPPLVSPFLAAMAH 213


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 181 TCFYRAVVNRLPASAADPYEVLFEDSSYADGY 212
           TC  ++++N    S ++ Y     D SYA  Y
Sbjct: 267 TCVNKSMLNSHMKSHSNVYRYSCRDCSYATKY 298


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 181 TCFYRAVVNRLPASAADPYEVLFEDSSYADGY 212
           TC  ++++N    S ++ Y     D SYA  Y
Sbjct: 25  TCVNKSMLNSHMKSHSNVYRYSCRDCSYATKY 56


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,283
Number of Sequences: 317
Number of extensions: 1312
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 234
length of database: 114,650
effective HSP length: 55
effective length of query: 179
effective length of database: 97,215
effective search space: 17401485
effective search space used: 17401485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)