GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001871-TA|BGIBMGA001871-PA|undefined
         (234 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0617 - 4939108-4939259,4939584-4940259                           30   1.4  
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496...    29   3.2  
04_04_0569 + 26293891-26294931                                         28   5.7  
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002     28   5.7  
02_02_0487 - 10860693-10861931                                         28   5.7  
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449...    27   9.9  
03_06_0468 + 34153425-34153823                                         27   9.9  
02_02_0403 - 9866122-9867231                                           27   9.9  

>11_01_0617 - 4939108-4939259,4939584-4940259
          Length = 275

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 99  NERRIQARHAGNKETIGCGALMKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARP 158
           + R ++A   G++E +   A++     A   + +HV  AGE  PP   A+  D     + 
Sbjct: 2   DRRLLRAARGGHREWLE--AVLLGAAPAPNHVTVHVAAAGEPQPPTAAALLLDVATTPQ- 58

Query: 159 GDAVAALVRVSDNEDNWILAETTCFYRAV 187
           GD+   +V  S + + ++    T +  A+
Sbjct: 59  GDSALHVVAASGDSEAFLSCARTIYRSAM 87


>02_05_0224 +
           26948263-26948520,26948831-26948907,26949597-26949658,
           26949797-26949915,26950326-26950493,26950587-26950619
          Length = 238

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 120 MKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVR 167
           ++LL +AA   P         +P +  A+P  A H  R   AV+ LVR
Sbjct: 12  LRLLRTAAALSPFSSSAPPRHSPRILRAIPVGAPHPPRVSAAVSPLVR 59


>04_04_0569 + 26293891-26294931
          Length = 346

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 143 PLCGAVPADAGHVARPGDAVAALVRVSDNEDNWILAETTCFYRAVVNR-LPASAA 196
           P+ GA+ ADA   ARP D + A +  S     WI A     Y  V  R  PA AA
Sbjct: 59  PMVGAMVADARFAARPSDIIVATLPKSGT--TWIKA---LLYATVHRREHPADAA 108


>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
          Length = 877

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 115 GCGALMKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVRVSDNEDN 174
           GC     L   AA  +   V  A  R       +   +  +A PG  + A    S +   
Sbjct: 5   GCTVQQALTAEAAAVVKQAVTLARRRGNAQVTPLHVASAMLAPPGGLLRAACLRSHSHPL 64

Query: 175 WILAETTCFYRAVVNRLPASAADPYEVLFEDSSYA-DGYSPPERVAQRYVIAIKEGK 230
              A   CF    +NRLPASAA     L     +   G+  P  ++   V A K  +
Sbjct: 65  QCKALELCF-NVALNRLPASAAVASSPLLGGHGHGHHGHYYPPSLSNALVAAFKRAQ 120


>02_02_0487 - 10860693-10861931
          Length = 412

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 159 GDAVAALVRVSDNEDNWILAETTCFYRAVVNR 190
           GDA+ AL RV DN + ++  +   F+  ++NR
Sbjct: 341 GDALVALHRVEDNAEVFLRVDRVIFHIHIMNR 372


>10_08_0323 +
           16743358-16743566,16744536-16744704,16744834-16744959,
           16745813-16745878,16745997-16746047
          Length = 206

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 109 GNKETIGCGALMKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVRV 168
           G K T+ C     L     +TL   +G   + +  +CG V +    V + GD +A   R 
Sbjct: 106 GGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVAS----VRQRGDKLALWTRT 161

Query: 169 SDNE 172
           + NE
Sbjct: 162 ASNE 165


>03_06_0468 + 34153425-34153823
          Length = 132

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/39 (41%), Positives = 16/39 (41%)

Query: 126 AAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAA 164
           A  T PL     G R  P   A P  A  VA P D  AA
Sbjct: 87  ACHTTPLTNVAGGARIRPSATAAPPSAAAVAAPADDTAA 125


>02_02_0403 - 9866122-9867231
          Length = 369

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 148 VPADAGHVARPGDAVAALV-RVSDNEDNWILAETTCFYRAVVNRLPASAADP-YEVLFED 205
           VP     ++ P DA+AA++ R+ D ED  ++  T    R +V  L A    P YE + + 
Sbjct: 172 VPLGRTLLSLPTDAMAAILSRLEDGEDLMVVECTCTALRRLVAELDAVLWKPMYEDVVDA 231

Query: 206 SSY-----ADGYSPPERVAQRYVIAI 226
             +     AD  SP     +R+  AI
Sbjct: 232 RRFAGVVRADDESPEMSWKERFTAAI 257


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,493,841
Number of Sequences: 37544
Number of extensions: 197689
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 8
length of query: 234
length of database: 14,793,348
effective HSP length: 80
effective length of query: 154
effective length of database: 11,789,828
effective search space: 1815633512
effective search space used: 1815633512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)