GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001871-TA|BGIBMGA001871-PA|undefined
         (234 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35890| Best HMM Match : DUF1325 (HMM E-Value=0.0011)                52   4e-07

>SB_35890| Best HMM Match : DUF1325 (HMM E-Value=0.0011)
          Length = 152

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/36 (61%), Positives = 27/36 (75%)

Query: 197 DPYEVLFEDSSYADGYSPPERVAQRYVIAIKEGKGR 232
           D Y V FED+SYADG++PP  V QRYV+ +KE K R
Sbjct: 117 DHYSVSFEDTSYADGFAPPLHVPQRYVVVVKETKRR 152



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 13/19 (68%), Positives = 17/19 (89%)

Query: 142 PPLCGAVPADAGHVARPGD 160
           PPLCGAVPA+  ++A+PGD
Sbjct: 95  PPLCGAVPAEPNYIAQPGD 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,973,773
Number of Sequences: 59808
Number of extensions: 199429
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 2
length of query: 234
length of database: 16,821,457
effective HSP length: 80
effective length of query: 154
effective length of database: 12,036,817
effective search space: 1853669818
effective search space used: 1853669818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)