GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001871-TA|BGIBMGA001871-PA|undefined
         (234 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011981-1|AAH11981.1|  293|Homo sapiens coiled-coil domain cont...    95   2e-19
AK057008-1|BAB71340.1|  293|Homo sapiens protein ( Homo sapiens ...    95   2e-19
Y13622-1|CAA73944.1| 1587|Homo sapiens latent TGF-beta binding p...    30   6.0  
AF051345-1|AAC39880.2| 1624|Homo sapiens latent transforming gro...    30   6.0  
AF051344-1|AAC39879.2| 1557|Homo sapiens latent transforming gro...    30   6.0  

>BC011981-1|AAH11981.1|  293|Homo sapiens coiled-coil domain
           containing 101 protein.
          Length = 293

 Score = 95.1 bits (226), Expect = 2e-19
 Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 8   AAQQVQERLRSLHRLIYDIEAERSRNEQCIDAILRAEXXXXXXXXXXXXXXXXXXXXXXX 67
           A  ++ E L  LH+LI   + ERSR+E  +  I +                         
Sbjct: 6   ADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTT 65

Query: 68  XXXXXGLTXXXXXXXXXXXXXXXIYEIRAIKNERRIQARHAG-------NKETIGCGALM 120
                                  I EI+++  ERRI A+ AG        ++T+  G LM
Sbjct: 66  AKADA-----EAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM 120

Query: 121 KLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVRVSDNEDNWILAET 180
            LL  +A TLPL +G+ G++ PPLCGA+PA   +VARPGD VAA V+  D ++ WILAE 
Sbjct: 121 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV 180

Query: 181 TCFYRA 186
             +  A
Sbjct: 181 VSYSHA 186



 Score = 77.4 bits (182), Expect = 4e-14
 Identities = 34/52 (65%), Positives = 40/52 (76%)

Query: 179 ETTCFYRAVVNRLPASAADPYEVLFEDSSYADGYSPPERVAQRYVIAIKEGK 230
           +TTCFYRA+++  P    D Y VLFED+SYADGYSPP  VAQRYV+A KE K
Sbjct: 240 QTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPK 291


>AK057008-1|BAB71340.1|  293|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32446 fis, clone SKMUS2001608. ).
          Length = 293

 Score = 95.1 bits (226), Expect = 2e-19
 Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 8   AAQQVQERLRSLHRLIYDIEAERSRNEQCIDAILRAEXXXXXXXXXXXXXXXXXXXXXXX 67
           A  ++ E L  LH+LI   + ERSR+E  +  I +                         
Sbjct: 6   ADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTT 65

Query: 68  XXXXXGLTXXXXXXXXXXXXXXXIYEIRAIKNERRIQARHAG-------NKETIGCGALM 120
                                  I EI+++  ERRI A+ AG        ++T+  G LM
Sbjct: 66  AKADA-----EAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM 120

Query: 121 KLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVRVSDNEDNWILAET 180
            LL  +A TLPL +G+ G++ PPLCGA+PA   +VARPGD VAA V+  D ++ WILAE 
Sbjct: 121 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV 180

Query: 181 TCFYRA 186
             +  A
Sbjct: 181 VSYSHA 186



 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 34/52 (65%), Positives = 39/52 (75%)

Query: 179 ETTCFYRAVVNRLPASAADPYEVLFEDSSYADGYSPPERVAQRYVIAIKEGK 230
           +TTCFYRA+ +  P    D Y VLFED+SYADGYSPP  VAQRYV+A KE K
Sbjct: 240 QTTCFYRALNHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPK 291


>Y13622-1|CAA73944.1| 1587|Homo sapiens latent TGF-beta binding
           protein-4 protein.
          Length = 1587

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 154 HVARPGDAVAALVRVSDNEDNWILAETTCFYRAVVNRLPASAADPYEVLFEDSSYADGYS 213
           HV  P +A   + +V      W  A+     RA      A AA PY VL + +   DGYS
Sbjct: 186 HVEHPQEASVVVHQVERVSGPWEEADAEAVARAEA-AARAEAAAPYTVLAQSAPREDGYS 244


>AF051345-1|AAC39880.2| 1624|Homo sapiens latent transforming growth
           factor-beta binding protein 4L protein.
          Length = 1624

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 154 HVARPGDAVAALVRVSDNEDNWILAETTCFYRAVVNRLPASAADPYEVLFEDSSYADGYS 213
           HV  P +A   + +V      W  A+     RA      A AA PY VL + +   DGYS
Sbjct: 223 HVEHPQEASVVVHQVERVSGPWEEADAEAVARAEA-AARAEAAAPYTVLAQSAPREDGYS 281


>AF051344-1|AAC39879.2| 1557|Homo sapiens latent transforming growth
           factor-beta binding protein 4S protein.
          Length = 1557

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 154 HVARPGDAVAALVRVSDNEDNWILAETTCFYRAVVNRLPASAADPYEVLFEDSSYADGYS 213
           HV  P +A   + +V      W  A+     RA      A AA PY VL + +   DGYS
Sbjct: 156 HVEHPQEASVVVHQVERVSGPWEEADAEAVARAEA-AARAEAAAPYTVLAQSAPREDGYS 214


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,758,399
Number of Sequences: 224733
Number of extensions: 897920
Number of successful extensions: 2341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2333
Number of HSP's gapped (non-prelim): 9
length of query: 234
length of database: 73,234,838
effective HSP length: 88
effective length of query: 146
effective length of database: 53,458,334
effective search space: 7804916764
effective search space used: 7804916764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)