GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001871-TA|BGIBMGA001871-PA|undefined
         (234 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical ...    69   3e-12
U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AF078785-1|AAC27092.1|  181|Caenorhabditis elegans Hypothetical ...    29   2.9  

>AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical
           protein Y17G9B.8 protein.
          Length = 297

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 179 ETTCFYRAVVNRLPASAADPYEVLFEDSSYADGYSPPERVAQRYVIAIKEGKG 231
           +TTCFY+ +V+  PA   +PY+V FED SYA G+ PP  VAQ+YV+A +E  G
Sbjct: 229 QTTCFYKGIVHSPPADFREPYQVAFEDDSYASGFCPPMPVAQKYVVAFREVAG 281



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 119 LMKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVRVSDNEDNWILA 178
           LM+L+      LPL      +      GA+    G     GD+VAA       + NWILA
Sbjct: 113 LMELIKVRGDLLPLWTSHDTQFPGEYVGAIAPQDGSKLGDGDSVAAF----SKDGNWILA 168

Query: 179 E-TTC 182
           +  TC
Sbjct: 169 DIVTC 173


>U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical
           protein T22B7.4 protein.
          Length = 537

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 180 TTCFYRAVVNRLPASAADPYEVLFEDSSYADGYSPPERVAQRYVIAIK-EGKGRA 233
           TTCFY  +V+  P   +  Y++ F D+      S P  V++RYV+A K E K  A
Sbjct: 233 TTCFYDGIVHEPPKIVSGFYKIRFTDNQKPGKLSDPMEVSERYVVAFKSEPKSNA 287


>AF078785-1|AAC27092.1|  181|Caenorhabditis elegans Hypothetical
           protein C04E12.6 protein.
          Length = 181

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 170 DNEDNWILAET-TCFYRAVVNRLPASAADPYEVLFEDSSYADGYSPPER 217
           D+E   IL E  T F   V    P+SA   YE L   +++ADGY+  ++
Sbjct: 27  DSERFMILYEIFTVFDEPVEEEKPSSAVIVYEELIVRTAFADGYTQNDK 75


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,258,716
Number of Sequences: 27539
Number of extensions: 140025
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 12,573,161
effective HSP length: 79
effective length of query: 155
effective length of database: 10,397,580
effective search space: 1611624900
effective search space used: 1611624900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)