GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001871-TA|BGIBMGA001871-PA|undefined
         (234 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04370.1 68417.m00624 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At5g40550.1 68418.m04921 expressed protein                             28   4.7  
At4g31910.1 68417.m04534 transferase family protein low similari...    28   4.7  
At3g27460.1 68416.m03432 expressed protein                             28   4.7  
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot...    28   6.2  
At2g38600.1 68415.m04741 acid phosphatase class B family protein...    28   6.2  
At1g72730.1 68414.m08410 eukaryotic translation initiation facto...    27   8.3  

>At4g04370.1 68417.m00624 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 729

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 149 PADAGHVARPGDAVAALVRVSDNEDNW 175
           P DAGH  + G + AA+ R  D  ++W
Sbjct: 648 PGDAGHYVKLGHSFAAMKRWDDVSESW 674


>At5g40550.1 68418.m04921 expressed protein
          Length = 273

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 180 TTCFYRAVVNRLPAS-AADPYEVLFEDSSYADGYSPPERVAQRYVIAIKEG 229
           TT  Y+A V   P    +D Y + F+D    DG  P   V    V+A+ EG
Sbjct: 221 TTALYKATVVSTPRKRKSDEYLLEFDDDE-EDGALPQRTVPFHKVVALPEG 270


>At4g31910.1 68417.m04534 transferase family protein low similarity
           to anthranilate N-hydroxycinnamoyl/benzoyltransferase
           Dianthus caryophyllus GI:3288180, 10-deacetylbaccatin
           III-10-O-acetyl transferase Taxus cuspidata GI:6746554;
           contains Pfam profile PF02458 transferase family
          Length = 458

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 123 LLSAAQTLPLH---VGRAGERAP---PLCGAVPADAGHVARPGDAVAALVRV 168
           L+S    +P H    G  GE A    PLC  VP  A  +  P DA   LVR+
Sbjct: 390 LISDWTKMPFHNVGFGNGGEPADYMAPLCPPVPQVAYFMKNPKDAKGVLVRI 441


>At3g27460.1 68416.m03432 expressed protein
          Length = 270

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 180 TTCFYRAVVNRLPAS-AADPYEVLFEDSSYADGYSPPERVAQRYVIAIKEG 229
           TT  Y+A V   P    +D Y + F+D    DG  P   V    V+A+ EG
Sbjct: 218 TTALYKATVISTPRKRKSDEYLLEFDDDE-EDGALPQRTVPFHKVVALPEG 267


>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
           similar to 5.9 kb fsh membrane protein [Drosophila
           melanogaster] GI:157455; contains Pfam profile PF00439:
           Bromodomain
          Length = 590

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 153 GHVARPGDAVAALVRVSDNEDNWILAETTCFYRAVVNRL 191
           GH+A+ GD +   +   DNE  W L      Y+ + +++
Sbjct: 436 GHLAQDGDEIELDIEAVDNETLWELDRFVTNYKKMASKI 474


>At2g38600.1 68415.m04741 acid phosphatase class B family protein
           similar to acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 251

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 165 LVRVSDNEDNWIL-AETTCFYRAVVNRLPASAADPYE 200
           ++   D  D WIL  + TCF      RL     DPY+
Sbjct: 91  IILPGDGMDAWILDVDDTCFSNVFYYRLKRYGCDPYD 127


>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 152 AGHVARPGDAVAALVRVSDNEDNWILAETTCFYRAVVNRLPASAAD 197
           +G   R G A+  +     +ED  ++A+   FY  VV  LP++ AD
Sbjct: 371 SGRFGRKGVAINFMT----SEDERMMADIQRFYNVVVEELPSNVAD 412


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,123,236
Number of Sequences: 28952
Number of extensions: 134760
Number of successful extensions: 258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 12,070,560
effective HSP length: 79
effective length of query: 155
effective length of database: 9,783,352
effective search space: 1516419560
effective search space used: 1516419560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)