Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001870-TA|BGIBMGA001870-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-09
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 33   0.52 
SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.4  
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)               29   8.4  

>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 61.7 bits (143), Expect = 2e-09
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 156 DSRKIEEIRRTVLVADTG-SLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQE 214
           D+ K+EEIRRTV V +    +T++ L+  F   G++KY+R    D    +YA IE  E +
Sbjct: 63  DANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQ 122

Query: 215 AVIKALHLNGSTLDGQTIQ 233
           A++ AL  +G+   G+ I+
Sbjct: 123 AIVSALQYSGAIFGGKPIK 141


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 33.5 bits (73), Expect = 0.52
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 176 TSQQLIDHFCQAGEVKYMRFC-SRDVDTLK-YALIEMTEQEAVIKAL-HLNGSTLDGQTI 232
           + +QL + F + G V   R    R+    K Y   E  +QE  + A+ +LNG  L+G+ +
Sbjct: 37  SEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRAL 96

Query: 233 QVYHATQSICKPQTKSNEAAQR 254
           +V  A     K + KS E   R
Sbjct: 97  RVDSAASEKNKEEIKSMEMTAR 118


>SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 583 TPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDS 618
           TP   P P+K    I+   D  D+N   DN+D+ D+
Sbjct: 121 TPPPSPQPEKETEEIDNDDDDEDDNDENDNVDVDDA 156


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 42   IRDVSCPVQSRICYVKYYDSANVNVAQHMTNTVFIDRALI--VIPVQSGEIPDEHKALEM 99
            +R + C V    C  K   +  V  +    +T  +DRA +    P +SG +P+E  A++ 
Sbjct: 2200 VRSMPCAVSIE-CNRK--SAEGVEQSPEKPSTSRVDRAQVSETSPSKSGSVPEEFSAVQS 2256

Query: 100  SSNGTLVPGLSSVEPRL 116
             S  +  P     EP++
Sbjct: 2257 PSTDSSFPTYDEHEPKI 2273


>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
          Length = 1311

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 230 QTIQVYHATQSICKPQTKSNEAAQREIEEAMCRVK 264
           +TI  +     ICKP  KSN   Q++  +++ R+K
Sbjct: 259 ETISNFFTNSIICKPAKKSNLTLQQKSSKSLTRIK 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,785
Number of Sequences: 59808
Number of extensions: 451666
Number of successful extensions: 1032
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 6
length of query: 619
length of database: 16,821,457
effective HSP length: 86
effective length of query: 533
effective length of database: 11,677,969
effective search space: 6224357477
effective search space used: 6224357477
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)