BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001870-TA|BGIBMGA001870-PA|IPR000504|RNA-binding region RNP-1 (RNA recognition motif) (619 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-09 SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 33 0.52 SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.1 SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.4 SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35) 29 8.4 >SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 548 Score = 61.7 bits (143), Expect = 2e-09 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 156 DSRKIEEIRRTVLVADTG-SLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQE 214 D+ K+EEIRRTV V + +T++ L+ F G++KY+R D +YA IE E + Sbjct: 63 DANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQ 122 Query: 215 AVIKALHLNGSTLDGQTIQ 233 A++ AL +G+ G+ I+ Sbjct: 123 AIVSALQYSGAIFGGKPIK 141 >SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) Length = 392 Score = 33.5 bits (73), Expect = 0.52 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 176 TSQQLIDHFCQAGEVKYMRFC-SRDVDTLK-YALIEMTEQEAVIKAL-HLNGSTLDGQTI 232 + +QL + F + G V R R+ K Y E +QE + A+ +LNG L+G+ + Sbjct: 37 SEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRAL 96 Query: 233 QVYHATQSICKPQTKSNEAAQR 254 +V A K + KS E R Sbjct: 97 RVDSAASEKNKEEIKSMEMTAR 118 >SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 165 Score = 31.5 bits (68), Expect = 2.1 Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 583 TPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDS 618 TP P P+K I+ D D+N DN+D+ D+ Sbjct: 121 TPPPSPQPEKETEEIDNDDDDEDDNDENDNVDVDDA 156 >SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3464 Score = 29.5 bits (63), Expect = 8.4 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Query: 42 IRDVSCPVQSRICYVKYYDSANVNVAQHMTNTVFIDRALI--VIPVQSGEIPDEHKALEM 99 +R + C V C K + V + +T +DRA + P +SG +P+E A++ Sbjct: 2200 VRSMPCAVSIE-CNRK--SAEGVEQSPEKPSTSRVDRAQVSETSPSKSGSVPEEFSAVQS 2256 Query: 100 SSNGTLVPGLSSVEPRL 116 S + P EP++ Sbjct: 2257 PSTDSSFPTYDEHEPKI 2273 >SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35) Length = 1311 Score = 29.5 bits (63), Expect = 8.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 230 QTIQVYHATQSICKPQTKSNEAAQREIEEAMCRVK 264 +TI + ICKP KSN Q++ +++ R+K Sbjct: 259 ETISNFFTNSIICKPAKKSNLTLQQKSSKSLTRIK 293 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.313 0.130 0.371 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,182,785 Number of Sequences: 59808 Number of extensions: 451666 Number of successful extensions: 1032 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 1027 Number of HSP's gapped (non-prelim): 6 length of query: 619 length of database: 16,821,457 effective HSP length: 86 effective length of query: 533 effective length of database: 11,677,969 effective search space: 6224357477 effective search space used: 6224357477 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.9 bits) S2: 63 (29.5 bits)
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