GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001870-TA|BGIBMGA001870-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (619 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     25   1.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   4.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   4.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   4.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   4.7  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 590 PDKSVPIIEKAPDINDENTSP 610
           PD+ +P+ +KA D++  N SP
Sbjct: 187 PDRPLPLDQKARDLSPRNGSP 207


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 167 VLVADTGSLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAV 216
           V+V  +G ++   L+    Q    K   FC+RD+   K  ++++   E V
Sbjct: 80  VIVLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERV 129


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 167 VLVADTGSLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAV 216
           V+V  +G ++   L+    Q    K   FC+RD+   K  ++++   E V
Sbjct: 80  VIVLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERV 129


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 167 VLVADTGSLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAV 216
           V+V  +G ++   L+    Q    K   FC+RD+   K  ++++   E V
Sbjct: 80  VIVLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERV 129


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 167 VLVADTGSLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAV 216
           V+V  +G ++   L+    Q    K   FC+RD+   K  ++++   E V
Sbjct: 80  VIVLGSGVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVKLPSAERV 129


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,204
Number of Sequences: 317
Number of extensions: 2985
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 619
length of database: 114,650
effective HSP length: 61
effective length of query: 558
effective length of database: 95,313
effective search space: 53184654
effective search space used: 53184654
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)