Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001870-TA|BGIBMGA001870-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0768 - 5935319-5935417,5935536-5935583,5935721-5935780,593... 49 1e-05
03_05_0905 - 28665838-28666422,28667073-28667156,28667335-286674... 44 5e-04
06_03_0374 + 20026179-20026661,20027170-20027280,20027372-200274... 43 8e-04
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 43 8e-04
08_01_0112 - 885965-886010,887084-887145,887908-887976,888076-88... 41 0.003
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 38 0.031
02_05_0810 - 31934965-31935013,31935096-31935217,31935328-319355... 37 0.041
01_01_0012 + 71903-72935,73468-73981,74619-76008 37 0.055
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665... 36 0.096
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 34 0.29
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 34 0.39
03_05_1134 + 30624373-30624378,30624474-30624592,30624729-306248... 33 0.67
09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856... 33 0.89
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 32 1.6
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 31 2.1
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 30 4.8
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 30 6.3
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641... 29 8.3
05_03_0259 - 11161447-11161706,11161764-11164266 29 8.3
04_04_1326 - 32668290-32668739,32668890-32669003,32669809-326698... 29 8.3
03_06_0418 + 33785482-33785870,33786098-33786173,33786985-337870... 29 8.3
>01_01_0768 -
5935319-5935417,5935536-5935583,5935721-5935780,
5935884-5935996,5936082-5936154,5936895-5936939,
5937020-5937133,5937227-5937253,5937963-5938247
Length = 287
Score = 48.8 bits (111), Expect = 1e-05
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 161 EEIRRTVLVADTG-SLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKA 219
+ IRRTV V+D ++T ++L D F G+V R C L++A IE ++E A
Sbjct: 128 DSIRRTVYVSDIDHTVTEERLADIFANCGQVVDCRICGDPHSVLRFAFIEFADEEGARTA 187
Query: 220 LHLNGSTLDGQTIQVYHATQSI 241
L+L G+ L ++V + +I
Sbjct: 188 LNLGGTMLGFYPVRVLPSKTAI 209
>03_05_0905 -
28665838-28666422,28667073-28667156,28667335-28667410,
28667497-28667600,28668673-28668735,28669312-28669317
Length = 305
Score = 43.6 bits (98), Expect = 5e-04
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 7 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
R ++V+NI+ A+K ++ F + G I+ + + S +S++ YV + DS +
Sbjct: 25 RTVKVSNISLNASKREITEFFSFSGDIEYVEMQ------SESERSQLAYVTFKDSQGADT 78
Query: 67 AQHMTNTVFIDRALIVIPVQSGEIPDE 93
A ++ +DR++I+ PV + ++P +
Sbjct: 79 AVLLSGATIVDRSVIITPVVNYQLPPD 105
>06_03_0374 +
20026179-20026661,20027170-20027280,20027372-20027416,
20029610-20029682,20029762-20029874,20030009-20030068,
20031518-20031565,20031658-20031726,20032928-20033092,
20033630-20033680,20034774-20034803
Length = 415
Score = 42.7 bits (96), Expect = 8e-04
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 161 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKA 219
+ +RRTV V+D +T Q+L + F G+V R C L++A IE + A
Sbjct: 184 DSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFADDVGARAA 243
Query: 220 LHLNGSTLDGQTIQVYHATQSI 241
L L G+ L ++V + +I
Sbjct: 244 LTLGGTVLGYYPVRVLPSKTAI 265
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 42.7 bits (96), Expect = 8e-04
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 161 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKA 219
+ +RRTV V+D +T Q+L + F G+V R C L++A IE + A
Sbjct: 170 DSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFADDAGARAA 229
Query: 220 LHLNGSTLDGQTIQVYHATQSI 241
L L G+ L ++V + +I
Sbjct: 230 LTLGGTMLGYYPVRVLPSKTAI 251
>08_01_0112 -
885965-886010,887084-887145,887908-887976,888076-888123,
888205-888264,888392-888504,888578-888650,888725-888769,
889382-889527,890782-890842,891913-892056,892164-892400
Length = 367
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 175 LTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQV 234
+T +QL F G+V R C L++A IE T++E+ AL+L+G+ L ++V
Sbjct: 197 VTEEQLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEESARAALNLSGTVLGYYPVRV 256
Query: 235 YHATQSI 241
+ +I
Sbjct: 257 LPSKTAI 263
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 37.5 bits (83), Expect = 0.031
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 174 SLTSQQLIDHFCQAGEVKYMRFCSRDVD---TLKYALIEMTEQEAVIKALH-LNGSTLDG 229
S+T QL + F QAG+V +R C RD+ +L YA + +AL LN + L+G
Sbjct: 49 SVTDSQLYELFSQAGQVMSVRVC-RDISSRRSLGYAYVNFNNPVDAARALELLNFAPLNG 107
Query: 230 QTIQVYHATQSICKPQTKSNEAAQREIEEAM 260
+ I+V ++ + ++ S + +++A+
Sbjct: 108 KPIRVMYSNRDPSSRRSGSANIFIKNLDKAI 138
>02_05_0810 -
31934965-31935013,31935096-31935217,31935328-31935519,
31937689-31937759,31938708-31938819,31938911-31939015
Length = 216
Score = 37.1 bits (82), Expect = 0.041
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 165 RTVLVADTG-SLTSQQLIDHFCQAGEVKYMRFCSRDVDTLK-YALIEMTEQEAVIKALHL 222
R+V V + + T +++ HF G V + + K +A +E EQEAV +AL+L
Sbjct: 90 RSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEALNL 149
Query: 223 NGSTLDGQTIQV 234
N S L G+ I+V
Sbjct: 150 NESELHGRQIKV 161
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 36.7 bits (81), Expect = 0.055
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 7 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
+++Q++N++P T D ++ LFGY GK+ D TI D I YV+Y
Sbjct: 358 KMVQISNLSPLLTVDHIKQLFGYCGKVVDC----TITD-----SKHIAYVEYSKQEEATA 408
Query: 67 AQHMTN 72
A + N
Sbjct: 409 ALALNN 414
>08_02_0162 +
13464698-13464974,13465719-13465837,13465920-13466579,
13466686-13466763,13466849-13466938,13467241-13467378,
13467730-13467738
Length = 456
Score = 35.9 bits (79), Expect = 0.096
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 174 SLTSQQLIDHFCQAGEVKYMRFCSRDVDT---LKYALIEMTEQEAVIKALH-LNGSTLDG 229
S+ QL D F Q G V +R C RDV+T L YA + + +AL LN + ++G
Sbjct: 49 SVQDAQLFDVFSQVGSVVSVRVC-RDVNTRLSLGYAYVNFSSPADAARALEMLNFTPING 107
Query: 230 QTIQVYHATQSICKPQTKSNEAA 252
+ I++ ++ + P ++ + AA
Sbjct: 108 KPIRIMYSNRD---PSSRKSGAA 127
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 34.3 bits (75), Expect = 0.29
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 174 SLTSQQLIDHFCQAGEVKYMRFCSRDVDT---LKYALIEMTEQEAVIKALH-LNGSTLDG 229
S+ QL D F Q G V +R C RDV+T L YA + + +AL LN + ++G
Sbjct: 50 SVQDAQLFDVFAQVGGVVSVRVC-RDVNTRRSLGYAYVNYSSPADAARALEMLNFTPING 108
Query: 230 QTIQVYHATQ 239
+ I++ ++ +
Sbjct: 109 KPIRIMYSNR 118
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 33.9 bits (74), Expect = 0.39
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 7 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
R + ++ +A + + F GK+ D+RL I D + + Y+++YD+ +V +
Sbjct: 193 RTVFAFQLSLKADERDVYEFFSRAGKVRDVRL---IMDRNSRRSKGVGYIEFYDAMSVPM 249
Query: 67 AQHMTNTVFIDRALIVIPVQS 87
A +T V + + ++V P ++
Sbjct: 250 AIALTGQVLLGQQVMVKPSEA 270
>03_05_1134 +
30624373-30624378,30624474-30624592,30624729-30624807,
30625784-30625858,30625954-30626028,30626314-30626651,
30626881-30627004,30627070-30627093
Length = 279
Score = 33.1 bits (72), Expect = 0.67
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 5 STRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCP--VQSRICYVKYYDSA 62
+ R ++V NI+ A + +++ F + G+I+ + D+ C R YV + D
Sbjct: 7 AVRTVRVRNISDLAGEREVREFFSFSGEIEHV-------DIRCDGVATGRTAYVTFKDPK 59
Query: 63 NVNVAQHMTNTVFIDRALIVIPVQ 86
+ +A ++ +DR + + P +
Sbjct: 60 ALEIALLLSGATIVDRVVNITPAE 83
Score = 30.3 bits (65), Expect = 4.8
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 165 RTVLVADTGSLTSQQLI-DHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQEAVIKALHLN 223
RTV V + L ++ + + F +GE++++ V T + A + + +A+ AL L+
Sbjct: 9 RTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLLS 68
Query: 224 GSTLDGQTIQVYHATQSICKPQT 246
G+T+ + + + A I P T
Sbjct: 69 GATIVDRVVNITPAEDYIYIPVT 91
>09_02_0398 +
8559332-8559718,8561264-8561386,8561537-8561581,
8562215-8562290,8562398-8562510,8562774-8562821,
8563101-8563229
Length = 306
Score = 32.7 bits (71), Expect = 0.89
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 157 SRKIEEIRRTVLVADTG-SLTSQQLIDHF-CQAGEVKYMRFCSRDVDTLKYALIEMTEQE 214
++K E +RRT+ V+D ++T L + F V R C L++A IE ++
Sbjct: 152 AQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVVDCRICGDHSSGLRFAFIEFQDES 211
Query: 215 AVIKALHLNGSTL 227
AL L+G L
Sbjct: 212 DAYAALDLDGYVL 224
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 31.9 bits (69), Expect = 1.6
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 174 SLTSQQLIDHFCQAGEVKYMRFCSR-DVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTI 232
+L Q+ + F + GEV +R + D + + ++ E KAL L+G LDG+ +
Sbjct: 321 NLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHGCDLDGRPV 380
Query: 233 QV 234
++
Sbjct: 381 RL 382
Score = 29.9 bits (64), Expect = 6.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 178 QQLIDHFCQAGEVKYMRF-CSRDVDTLK-YALIEMTEQEAVIKALHLNGSTLDGQTIQVY 235
+ L HF GE+ + R+ K A I+ +Q + KAL L+GS L G + V
Sbjct: 429 ESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYVD 488
Query: 236 HA 237
A
Sbjct: 489 EA 490
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 89 EIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTLDGIPPNQV 132
E P++ +A E S GTLV G VE ++ I TL +PPNQV
Sbjct: 394 EYPEKGQAREFGSTGTLVSG---VEAKIV--DIKTLKHLPPNQV 432
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 30.3 bits (65), Expect = 4.8
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 254 REIEEAMC-RVKEAQNFISAAIDPVIGLLSKDKRS---SRWPVTGLGHVPGRVADL 305
RE+ + +C +KEA F+ + P++G LS +K+ R P +G PGR+ +L
Sbjct: 241 RELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVG-TPGRLWEL 295
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 29.9 bits (64), Expect = 6.3
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 7 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
R + ++ +A + + F GK+ D+RL I D + + Y+++YD +V +
Sbjct: 190 RTVFAYQLSLKADERDVYEFFSRAGKVRDVRL---IMDRNSRRSKGVGYIEFYDVMSVPM 246
Query: 67 AQHMTNTVFIDRALIVIPVQS 87
A ++ + + + ++V P ++
Sbjct: 247 AIALSGQLLLGQQVMVKPSEA 267
>06_01_0844 -
6411121-6411129,6411671-6411796,6411980-6412043,
6412568-6412695,6412855-6412971,6414936-6415475,
6415554-6417344,6418359-6421407,6421765-6421823,
6422738-6422791
Length = 1978
Score = 29.5 bits (63), Expect = 8.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 277 VIGLLSKDKRSSRWPVTGLGHVPGRVADLGLGRVVLAPDTA 317
++ LLSK+ S+W +T G +P V L G D+A
Sbjct: 506 LLALLSKENDESKWAITAAGGIPPLVQILETGSPKAKEDSA 546
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 29.5 bits (63), Expect = 8.3
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 70 MTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPG--LSSVEPRLPMHVINTL-DG 126
M VFI AL+ + G++ + + L+ N ++PG +S++E HV++T+ DG
Sbjct: 635 MNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADG 694
Query: 127 IP 128
P
Sbjct: 695 NP 696
>04_04_1326 -
32668290-32668739,32668890-32669003,32669809-32669884,
32670224-32670339
Length = 251
Score = 29.5 bits (63), Expect = 8.3
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 2 VSGSTRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRL 38
+SG+ ++VTN++ +A++ + F + G I+ I L
Sbjct: 1 MSGTGYTVEVTNLSSRASESDLHEFFSFSGAIEHIEL 37
>03_06_0418 +
33785482-33785870,33786098-33786173,33786985-33787071,
33788096-33788143
Length = 199
Score = 29.5 bits (63), Expect = 8.3
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 7 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
RV+ V N+ + ++M +FG G I IRL +D + + Y YD+ N
Sbjct: 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRL-GNAKDTR--GTAFVVYEDIYDAK--NA 73
Query: 67 AQHMTNTVFIDRALIVIPVQSGEI 90
H++ +R LIV+ Q ++
Sbjct: 74 VDHLSGFNVANRYLIVLYYQPAKM 97
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.130 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,327,875
Number of Sequences: 37544
Number of extensions: 380458
Number of successful extensions: 929
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 26
length of query: 619
length of database: 14,793,348
effective HSP length: 86
effective length of query: 533
effective length of database: 11,564,564
effective search space: 6163912612
effective search space used: 6163912612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -