GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001870-TA|BGIBMGA001870-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (619 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...   142   7e-34
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...   142   7e-34
Z49911-12|CAD30448.1|  137|Caenorhabditis elegans Hypothetical p...    87   5e-17
Z36948-7|CAD30436.1|  137|Caenorhabditis elegans Hypothetical pr...    87   5e-17
Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical pr...    31   3.2  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    31   3.2  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    29   9.7  

>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score =  142 bits (344), Expect = 7e-34
 Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 10/258 (3%)

Query: 7   RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
           +++ V NI+  AT+D +  +F YLGKI D+++YP+  +++     +  ++K+ D   V V
Sbjct: 10  KILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEV 69

Query: 67  AQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTL-D 125
           AQH+TNTV ID A++ +P  +  IPDE      +S G+   G    + +LP HV N + +
Sbjct: 70  AQHLTNTVVIDCAIVCLPYPNPVIPDEESF--FNSGGSTTAG----QRQLPPHVTNKIQE 123

Query: 126 GIPPNQVIQTHDANLTAAGXXXXXXXXXXXDSRKIEEIRRTVLVAD-TGSLTSQQLIDHF 184
               + ++ T D  L   G           DS K+EEIRRTV V +    +   ++++ F
Sbjct: 124 SDDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELF 183

Query: 185 -CQAGEVKYMRFCS-RDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQVYHATQSIC 242
               GEV Y R  S  D     YA +E ++Q +V  AL  +G     + +++ H+  +I 
Sbjct: 184 NMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAII 243

Query: 243 KPQTKSNEAAQREIEEAM 260
           KPQ K++E A  EIEEA+
Sbjct: 244 KPQAKTDEQALGEIEEAI 261


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score =  142 bits (344), Expect = 7e-34
 Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 10/258 (3%)

Query: 7   RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
           +++ V NI+  AT+D +  +F YLGKI D+++YP+  +++     +  ++K+ D   V V
Sbjct: 10  KILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEV 69

Query: 67  AQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTL-D 125
           AQH+TNTV ID A++ +P  +  IPDE      +S G+   G    + +LP HV N + +
Sbjct: 70  AQHLTNTVVIDCAIVCLPYPNPVIPDEESF--FNSGGSTTAG----QRQLPPHVTNKIQE 123

Query: 126 GIPPNQVIQTHDANLTAAGXXXXXXXXXXXDSRKIEEIRRTVLVAD-TGSLTSQQLIDHF 184
               + ++ T D  L   G           DS K+EEIRRTV V +    +   ++++ F
Sbjct: 124 SDDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELF 183

Query: 185 -CQAGEVKYMRFCS-RDVDTLKYALIEMTEQEAVIKALHLNGSTLDGQTIQVYHATQSIC 242
               GEV Y R  S  D     YA +E ++Q +V  AL  +G     + +++ H+  +I 
Sbjct: 184 NMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAII 243

Query: 243 KPQTKSNEAAQREIEEAM 260
           KPQ K++E A  EIEEA+
Sbjct: 244 KPQAKTDEQALGEIEEAI 261


>Z49911-12|CAD30448.1|  137|Caenorhabditis elegans Hypothetical
           protein D2089.1b protein.
          Length = 137

 Score = 86.6 bits (205), Expect = 5e-17
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 7   RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
           +++ V NI+  AT+D +  +F YLGKI D+++YP+  +++     +  ++K+ D   V V
Sbjct: 10  KILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEV 69

Query: 67  AQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTL 124
           AQH+TNTV ID A++ +P  +  IPDE      +S G+   G    + +LP HV N +
Sbjct: 70  AQHLTNTVVIDCAIVCLPYPNPVIPDEESF--FNSGGSTTAG----QRQLPPHVTNKI 121


>Z36948-7|CAD30436.1|  137|Caenorhabditis elegans Hypothetical
           protein D2089.1b protein.
          Length = 137

 Score = 86.6 bits (205), Expect = 5e-17
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 7   RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 66
           +++ V NI+  AT+D +  +F YLGKI D+++YP+  +++     +  ++K+ D   V V
Sbjct: 10  KILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEV 69

Query: 67  AQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTL 124
           AQH+TNTV ID A++ +P  +  IPDE      +S G+   G    + +LP HV N +
Sbjct: 70  AQHLTNTVVIDCAIVCLPYPNPVIPDEESF--FNSGGSTTAG----QRQLPPHVTNKI 121


>Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical
           protein F35H8.5 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 168 LVADTGSLTSQQLIDHFCQAGEVKYMRFCSRDVDTLKYALIEMTEQ-EAVIKALHLNGST 226
           L +DT      QL   F     VK +R  ++      YA + M+   EA    L LNG+ 
Sbjct: 381 LSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKG--YAFVSMSNYTEAYNAMLSLNGTN 438

Query: 227 LDGQTIQV 234
           L G+T+QV
Sbjct: 439 LAGKTLQV 446


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 66   VAQHMTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPGLSSVEPRLPMHV 120
            VA+  TN   I   L V+P +   + DE K +++    TL+  +S + P    HV
Sbjct: 1280 VAELSTNGDVIGYKLRVVPERESLMADETKVIDIPGQSTLMAKVSDLRPFTSYHV 1334


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 237 ATQSICKPQTKSNEAAQREIEEAMCRVKEAQNFISAAID 275
           A ++  K   K  EA  +++E+A CR KEA+    AA++
Sbjct: 54  AAKAAIKKAVKKYEAEVKKLEKAGCREKEAEEAQHAALE 92


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,753,181
Number of Sequences: 27539
Number of extensions: 340810
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 7
length of query: 619
length of database: 12,573,161
effective HSP length: 86
effective length of query: 533
effective length of database: 10,204,807
effective search space: 5439162131
effective search space used: 5439162131
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)