GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001870-TA|BGIBMGA001870-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (619 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 50  QSRICYVKYYDSANVNVAQHMTNTVFIDRA 79
           + + CY  Y+ S   +  +H+T   F  RA
Sbjct: 384 KEKTCYYPYHPSTQEDSEEHLTPKRFHSRA 413


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 50  QSRICYVKYYDSANVNVAQHMTNTVFIDRA 79
           + + CY  Y+ S   +  +H+T   F  RA
Sbjct: 384 KEKTCYYPYHPSTQEDSEEHLTPKRFHSRA 413


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 578 KSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDN 612
           ++ +R P LPP   + +P +   P     +T+PD+
Sbjct: 632 ETEERLPPLPPKRIRKMPSMPLLPRPISCHTTPDS 666


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,048
Number of Sequences: 429
Number of extensions: 3771
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 619
length of database: 140,377
effective HSP length: 62
effective length of query: 557
effective length of database: 113,779
effective search space: 63374903
effective search space used: 63374903
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)