GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001869-TA|BGIBMGA001869-PA|IPR013602|Dynein heavy chain,
N-terminal region 2, IPR011704|ATPase associated with various cellular
activities, AAA-5, IPR004273|Dynein heavy chain
         (3796 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    28   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   1.9  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    27   3.3  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    25   10.0 
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      25   10.0 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    25   10.0 

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 691 YLDHNQIEQDHDFYYKEFLKISK 713
           Y DH ++E + +FYY  ++ I +
Sbjct: 163 YTDHQRVELEKEFYYSRYITIRR 185


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 3216 IKYCERMGFSHRFNSISLGQGQGPIARAMIEKAQSEGGW 3254
            +K  ++ G S + + ++   G  PI R MIE  QS+  W
Sbjct: 902  LKVLDKSGRSVQLSWVAPFDGNSPITRYMIEYKQSKVSW 940


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
            candidate 42 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1350 DYGMRAVKTVLSAAGNLKRSFPNESESVLLLRSITDVNLPKF 1391
            D  +  VKT L  A  +++ FPNE +++    ++   N P F
Sbjct: 272  DAVLEEVKTTLLLAYKIRQVFPNEKKNISEFINVVLNNYPDF 313


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 809 GDLDQYEIISVAATKELALITNLNKMMAEWIQSVLDDHIVKTVGMRGSAFVKPFEAQVRT 868
           GD +   +I    T+E  ++  + K     + +  ++ +  TV  RGS   K    ++R 
Sbjct: 294 GDYNHVPMIFGYTTREGMIVEMMRKTETPGMPNDFEEFVHPTVAKRGSITSKNVAKKIRD 353

Query: 869 WY 870
           +Y
Sbjct: 354 FY 355


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/88 (19%), Positives = 37/88 (42%)

Query: 809 GDLDQYEIISVAATKELALITNLNKMMAEWIQSVLDDHIVKTVGMRGSAFVKPFEAQVRT 868
           GD +   +I    T+E  ++  + K     + +  ++ +  TV  RGS   K    ++R 
Sbjct: 296 GDYNHVPMIFGYTTREGMIVEMMRKNETPGMPNDFEEFVHPTVAKRGSITSKNVANKIRD 355

Query: 869 WYEKIVRVNATIDEWGKVQSQWLYLLPI 896
           +Y +       +D +  + +   +L  I
Sbjct: 356 FYYEGPNSENNLDNFYLIHTDTYFLRDI 383


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor subunit
            protein.
          Length = 243

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 1103 NTHKLSELQA-FHSELTKQLNETVAVIRRTDLTKLSSITVKALIVIDVHAKDVISDLIKK 1161
            +T  ++E Q+ FH   T   NE + V     +T+   +T+ A   +++    +   L   
Sbjct: 126  DTFFVNEKQSYFHIATTS--NEFIRVHHSGSITRSIRLTITASCPMNLQYLPMDRQLCH- 182

Query: 1162 KVTEVTDFQW-LAQLRYYWEEERVYVKIINAVVHYAYEYLGNSDRLVITPLTDRCYRTL 1219
               E+  F + +  +RY W E    V + + V    ++ LG+  R V   LT   Y  L
Sbjct: 183  --IEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRRRAVEISLTTGNYSRL 239


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,590
Number of Sequences: 317
Number of extensions: 39551
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 8
length of query: 3796
length of database: 114,650
effective HSP length: 71
effective length of query: 3725
effective length of database: 92,143
effective search space: 343232675
effective search space used: 343232675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)