Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001869-TA|BGIBMGA001869-PA|IPR013602|Dynein heavy chain,
N-terminal region 2, IPR011704|ATPase associated with various cellular
activities, AAA-5, IPR004273|Dynein heavy chain
(3796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 246 4e-65
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 33 0.59
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 33 1.0
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 32 1.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 32 1.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 32 1.8
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 31 3.2
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 31 4.2
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 4.2
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 31 4.2
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 31 4.2
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 31 4.2
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 30 5.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 30 5.5
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 30 7.3
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 29 9.6
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M... 29 9.6
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 9.6
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 29 9.6
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 246 bits (603), Expect = 4e-65
Identities = 207/789 (26%), Positives = 354/789 (44%), Gaps = 85/789 (10%)
Query: 883 WGKVQSQWLYLLPIFSSKDIVAQM-PEEGVMFVEVNNIYRRYMGSVDKDPHVLEIAGGTG 941
W ++Q W +L IF + Q+ PE F + Y + + + ++ +++
Sbjct: 1535 WKEIQQIWTHLSAIFYESTYIQQLLPELAASFFNSSKTYMHLVTLLKERSYLYKVSNIPS 1594
Query: 942 ILEAFRAATAFLEKINDGVNNYLEKKRLYFPRFFFLSNDEMLEILSETKNPLKVQPHLKK 1001
+LE+ + LE + Y E +R R +FL +D+++E++S +P + + K
Sbjct: 1595 LLESAAKLSTTLEDSKKSLLKYFELQRHKISRLYFLGDDDLMELISNPCDPFVINKQIIK 1654
Query: 1002 CFEGINRLVFDGE-FNISAMISMEGEQVEF------LDMISVAAARGSVEKWLVQVEEQM 1054
+ GI L+ D E NI+ + EG ++ F LD S+E +L Q+
Sbjct: 1655 LYPGIRSLIVDTENTNINGCTTNEGNELLFDNPICLLDNTQPLHWISSLEPFLKATLFQL 1714
Query: 1055 LKAVKSETEISYYDYP-NMGRVEWVLSWEGMVVLAISQIYWAVDVHESLNTHKLSELQAF 1113
+ YY+ N+ EW L + + L + ++ + L + F
Sbjct: 1715 FSTSFQQIRDFYYNKSRNVFCKEWFLRYPSQITLLSLRCTLCHEIETGIADCCLDAVFNF 1774
Query: 1114 HSELTKQLNETVAVIRRTDLTKLSSITVKALIVIDVHAKDVISDLIKKKVTEVTDFQWLA 1173
+ ++ V + +L+ +T+ ++ H K+ + L K ++ W
Sbjct: 1775 ---INDGISSLVLLADENELSIKKKVTLMFNELL--HFKETVGLLCKNSFN---NYFWSR 1826
Query: 1174 QLRYYWEE----ERVYVKIINAVVHYAYEYLGNSDRLVITPLTDRCYRTLIGAYYLHLNG 1229
+++ ++ E E V +K+ + YA+EY D +V T LT C+ L+ + +L G
Sbjct: 1827 EVKAFYREDHDDEAVVIKMFSLEFIYAFEYSELDDPIVYTDLTRNCFSVLLHSIASNLGG 1886
Query: 1230 APEGPAGTGKTETTKDLAKALAVQCVVFNCSDGLDYKAMGKFFKGLASCGAW-------- 1281
+P GPAGTGKTET K ++ L VFNC + +YK + + GLA G +
Sbjct: 1887 SPIGPAGTGKTETVKAVSAYLGKNVFVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNR 1946
Query: 1282 -------AVR---QHLETFDFEGTTLKLNP----ACYVCITMNPGYAGRSELP------- 1320
A+ Q +++ L +P A + +TMNPGY GR +LP
Sbjct: 1947 LDSGTLSAISYDIQRIQSLVSHSDGLCQSPILLDAPTIFVTMNPGYLGRFKLPSNLKKLF 2006
Query: 1321 --------DNLKVL--------FRTVAMM--VPDYAMI---EQLSSQNHYDYGMRAVKTV 1359
DN K+ F+ +++ V D + LS+ HYD+G+RA+K V
Sbjct: 2007 RPIWMGSPDNKKICEILFLSFGFKESSLLSQVLDSFFLCCSGSLSNCLHYDFGLRAMKVV 2066
Query: 1360 LSAA----GNLKRSFPNESESVLLLRSITDVNLPKFLSFDVPLFEGIISDLF--PGISLP 1413
+ AA G LK+ E +L +I +V P + D+PLF F P +
Sbjct: 2067 IKAAKRIKGFLKKKNTICQELEILWYAIREVLYPSLIYQDIPLFFKAEESYFNFPAVKAN 2126
Query: 1414 K-PDYENFLNACHDVCENNNLQPMECFLIKVIQTYEMMIVRHGFMLVGNPFSGKSMTLKV 1472
D +NF N + +K++Q Y+M +G +L+G SGKS ++
Sbjct: 2127 AFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMSEAYNGIILLGKTGSGKSQIFRI 2186
Query: 1473 LSEALSLIHERNQPDGCECTYKVLNPKAVTMGQLYGAFDPISYEWTDGIVATMFREFASE 1532
L AL I G +C V++PKA+T L+G+ + + EWTDG+ + R+
Sbjct: 2187 LQSALLNI-------GIDCIVYVISPKALTKESLFGSMNMDTREWTDGVFTKLLRKTRDS 2239
Query: 1533 DTPVRKWIVFDGPVDAVWIENMNTVLDDNKKLCLTSGEVMAMSNVMSMIFEVMDLSQASP 1592
R VFD + W+E MN++LDDNK L L++GE +A+ + + FE ++ +
Sbjct: 2240 CYYKRYMFVFDDELSPEWVEAMNSLLDDNKTLTLSNGERIALQPYVKIFFEADSVASLTR 2299
Query: 1593 ATVSRCGMI 1601
AT+SRCG+I
Sbjct: 2300 ATISRCGLI 2308
Score = 193 bits (471), Expect = 4e-49
Identities = 233/1193 (19%), Positives = 488/1193 (40%), Gaps = 83/1193 (6%)
Query: 1917 YDTIFYGAIAATTDIYDQARENLRPTPAKSHYIFNLRDFSRVIQGCALLRKESAD-NKKT 1975
Y TI + A+ Y REN + + Y++ RD +R + + A+ N +
Sbjct: 2686 YKTIILNIVKASVKFYQVLRENFKSST--QGYVYTPRDLTRWLISFKNYAESYAETNNLS 2743
Query: 1976 FIKIWIHEIMRVFYDRLVDDQDRAWFFGVLKKSTRDFMKDTFESALETYQDEKGEVNQEN 2035
IK+W HE RV DRLV ++ +W L+K + D E EV+
Sbjct: 2744 LIKVWYHEACRVLLDRLVSQKECSWGMTELQKV---IVTDFGEF----------EVSVIF 2790
Query: 2036 IKKMMFGCYLDTDSAEGERRYEEIPSKEVFLNIAVSMLSEYNSMHKAKMTIVLFDYALEH 2095
K+++F TD + + + S L S+ ++ S H T+V D + H
Sbjct: 2791 EKQIIF-----TDILKNGLEFLDFASLRPKLE---SLYKKFYSSHPNN-TLVFVDETITH 2841
Query: 2096 LSKICRILSMPSGNALLVGVGGSGRQSLTRLASTILGQQVFQPEITKSYSVKDWHDDIKL 2155
+ + RIL+ +ALL G G G++++ + +F+ + ++YS++D+ D++K
Sbjct: 2842 ILRFHRILNNSGMHALLQGSVGLGQKAVVEFVCWLNSFSLFELQKNQTYSIEDFEDNLKS 2901
Query: 2156 VLRESGGLNKDTTFLFTESQIKEESYIQNLDSLLNSGEVPNLYGLDEKQEILELVRLAAQ 2215
+L +G N ES ++ L++LL + EV N + ++ EI + + +
Sbjct: 2902 ILILAGTTNCKACLAINESIAGVPGFLDLLNNLLTNSEVSNFFDQNDWAEIKKNLNKLNE 2961
Query: 2216 GGNRNLDISPLQILAFFVGRCKAKLHIVL-CFSPIGSSFRTRLRLYPSLVNCCTIDWYDS 2274
D S + F+ L +V ++ F+T L P+L+N CTID+Y S
Sbjct: 2962 FQPLKFD-SEESVTEIFMNNVFQNLCVVFYVYTSADVDFQTN-SLSPALLNRCTIDYYHS 3019
Query: 2275 WPEDALEMVAHHYM---VKVNVPD-------PVKSSAVI-ACKQFHVDARIVSIDFFNHF 2323
W ++ +A+ + + +N D +K S++ A Q V+ + F H
Sbjct: 3020 WDYHSMLQIANEVLQETISLNALDHDNPNLKNIKGSSIYDAVAQAVVNTHTSIVWEFKHL 3079
Query: 2324 GRETYITSASYLDLIKSFTTLTNRKQRELRAAKLRYTNGLDQLGQAADAVAIMQRDLNAL 2383
G+ +Y + ++ + +F + R +L K R NG ++ + + + + L+
Sbjct: 3080 GKTSYFSCLHFIRFLNTFCLIFGRDANKLSKEKSRIENGFKKIKETSQGIDKFKEALSDQ 3139
Query: 2384 KPQLIVMAEKSAKMMQ-EIEVETAIADKAAAQVREDQKXXXXXXXXXXELKKDCEADLAL 2442
+ L + + +Q I+ + A+ K + + + E K +++
Sbjct: 3140 QNVLFSKTKTANDRLQCIIQTKQAVEAKKVYSL-QAEASLQKKSFLLNEKKNSVMKEVSY 3198
Query: 2443 ALPILEDAIAALNTLKPADITIVKSMKNPPYTVKLVMAAVCVXXXXXXXXXXXXXXXXXX 2502
A P + +A +++ +K A + ++S+ PP +++ M VC
Sbjct: 3199 AKPAVIEARKSVSDIKKAHLIELRSLSRPPMAIRITMEVVCKLLGFSATD---------- 3248
Query: 2503 MFDFWGPSKRILGDMGFLDSLKNFD-KDNIPVATMQKIRKEYLSNKDFKPHIVAKASAAA 2561
W +++L F+ + N++ + + + +KI ++Y SN F V +AS A
Sbjct: 3249 ----WKNVQQLLKRDDFIPKILNYNLEKELSINLRRKIEQDYFSNPIFTFDSVNRASKAC 3304
Query: 2562 EGLCKWIIAMDMYDXXXXXXXXXXXXXXXXXXXXXQTMAILEEKKAMVXXXXXXXXXXXX 2621
L WI ++ Y ++E A
Sbjct: 3305 GPLLLWIKSICNYSKVLEKLEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQLQE 3364
Query: 2622 XXXXXNIKKKALEDEVQLCIDKLFRAEKLIGGLGGEKVRWTVAAENLQTLYDNLAGDILV 2681
+ ++E ++ K+ R+ ++I L E+ W+ NL G+ L+
Sbjct: 3365 EYASMISEIHSMELQMDEVKCKMQRSIEVITDLSIERNEWSGFLNLYPKRMWNLVGESLM 3424
Query: 2682 SCGIIAYLAPYTLPIRIEIIDKWRDLVIKLNMPHSEQFVFKDV-LGTDIKIQNWCIAGLP 2740
+ Y +RI + +K ++ P S+ V ++ I++ L
Sbjct: 3425 EASFVVYAGNLDPSMRIFLRNKCEPIISSFGFPISKSAVRTNIERCVQTSIESKYYKNLT 3484
Query: 2741 RDLFSIDNA-IIQDNSMRWSLLIDPQGQANKWIKTMEKTNDLQVLKFTDGNYMKVIETCL 2799
+S++N IIQ+N L+IDP Q + ++ K ++ F++ ++ I+ L
Sbjct: 3485 D--YSLENIYIIQENKSP-LLIIDPSSQILDILPSLYKGKASDLISFSNKSFQNQIKLAL 3541
Query: 2800 EYGKPALI-DCVLEDVEAPLDPVLLKLTYLQGGKEFIALGDNVIEYHPNFRLYMTTKLRN 2858
G +I D L DV ++P+L + G+ + I + +++++
Sbjct: 3542 LSGSAIIIKDAELWDVS--IEPLLKPEFFTGSGEVQTTFAKDTITITLPLNIIFFSEVQS 3599
Query: 2859 PHYLPEIFNKVTLINFALTKDGLEDQSLGIVVAKERPDLQEKREKLIVQGAANRAALKQV 2918
+ + ++NF L+ LE Q L V++ + P + ++++ + ++ +
Sbjct: 3600 NELENKASKFMNVVNFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSIERQIRSL 3659
Query: 2919 EDDILRTLQETKGDILEDESAIEVLDSSK----NLAIDIMKKQEASLETETIIEKFRLGY 2974
++ +L+TL + +I+ + + +L + K + + + Q + + + +I +++L
Sbjct: 3660 QEQLLKTLCSSNENIVGTDEIVVLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKLSI 3719
Query: 2975 RPIASHSAVLYYCVTELPNVDPMYQYSLTWFINLYIISIENAN---KSKDLEKRLKFLKD 3031
+ S V + ++ + + + + F + + +EN N KS ++ ++
Sbjct: 3720 KSFLSVVVVFQHFISLKKSYSFSFNFIWSTFHQMLNVVLENRNQDFKSLIMDALRDLIRR 3779
Query: 3032 TFTYNLYSNVCRSLFDKDKLMFSFIMCSKMMLSTEKMNVDEYKFLITGGIAVE 3084
F Y +F +D+++F F++ M K K LI G +E
Sbjct: 3780 CFLY---------IFPEDRVLFLFLL---MFFFFPKETESLRKLLIVNGKTLE 3820
Score = 43.6 bits (98), Expect = 6e-04
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 1781 TVIPTLETEKFMYLLNLHSKYLKPLLLIGPTGTGKSFYVQNFLMNNLDMEKYTPGFIXXX 1840
TVIPTL+T ++ LN + ++ GP G+GKS + L + D+E F
Sbjct: 2492 TVIPTLDTVRYAEFLNFSLTKNRCVIFCGPPGSGKSMLMLGTLRSRQDVEVIALNF---S 2548
Query: 1841 XXXSANQTQDLVISKLVKRRKNNY----GPTRGKHAIIFIDDMNMPAKEVYGAQPAIELL 1896
S+ + V R K ++F D++N+P A+ I L
Sbjct: 2549 ISTSSKSVVSFLEQSTVYYRSTGMTIMCPKNHEKVLVLFCDEINLPRSRNCLAEDVICFL 2608
Query: 1897 RLYFD-QKHWYDLKTTDKLFIYDTIFYGAIAATTDI 1931
R + Q W+ L + + I + GA +TDI
Sbjct: 2609 RHMLEHQGFWHPLH-KEWVTIKNIFVCGACNPSTDI 2643
Score = 38.3 bits (85), Expect = 0.021
Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 15/252 (5%)
Query: 3230 SISLGQGQGP-IARAMIEKAQSEGGWVCLQNCHLAVSWLPVLEKIVEGFDLTNTDLSFRL 3288
++SLG + +A + ++ A +E W+ + N HL+ W L + N+ R+
Sbjct: 3934 TVSLGSAENESLADSYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLHKNS----RI 3989
Query: 3289 WLTSYPSDKFPQSVLQVGVKMTNEPPTGLQHNLNRSYISEPLKEPEFYEGCPGKDKTFSK 3348
S ++ P +L + + T ++NL + E L P P F +
Sbjct: 3990 VCLSEIHNQLPHQLLCISRSIVFNKQTSFKNNLLN--LLELL--PTMTHTLP--HNRF-R 4042
Query: 3349 LLYGISFFHAVVQERKKFGPLGWNIQYGFNDSDFQISVMQLQMFLNQ---YEEIQYVAIK 3405
L + +S+ HA + E F W F+DSDF L L + EE + K
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEPCYFDDSDFYFGTKILCNILYRNVHLEEFSWGTFK 4102
Query: 3406 YLTGECNYGGRVTDDWDRRLIVTILDNYVNSGVVNDPNYLFCELGQQYGLPRRCEYQDYL 3465
L YG +V+ D + IL + + + ++ LP +
Sbjct: 4103 DLLLNVVYGPKVSASSDFIALDKILKRLIAQFKTQISSNILLTDNFKFILPYEITFSSAK 4162
Query: 3466 KHIESVPINPPP 3477
+ I +P PP
Sbjct: 4163 EVIGQLPDEIPP 4174
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.5 bits (73), Expect = 0.59
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1801 YLKPLLLIGPTGTGKSFYVQNFLMNNLD 1828
YL ++L GP+GTGKS +Q F+ N D
Sbjct: 8 YLVKIVLAGPSGTGKSCLLQRFVKNQWD 35
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 32.7 bits (71), Expect = 1.0
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 484 NESICSEFEIIAAKALKEPENATELIEQGVYILHAKTVLVEALKERILVQINIISNLLEM 543
NE++C+ E + KE ++ + + +L + + + E + +I+I+S + M
Sbjct: 13 NEAVCNWIEQLGFPH-KEAFEDYHILGKDIDLLSSNDLRDMGI-ESVGHRIDILSAIQSM 70
Query: 544 TSLSSDHVKSNTRTVNWLKDIKPIFEKNAAAYETFKADMEESLLGKIAYLNKEVTDMTPY 603
D ++ + LK+I+ ++K E D SL ++ YL E T +
Sbjct: 71 KKQQKDKLQQENKDQE-LKNIEESYKKLEEKTEHLSDD-NVSLEKRVEYLETENTKLVKT 128
Query: 604 LELLDNMDDVNHTLEYLEYLRKLVHRLHDCDKLVTWINNEETTFKFPVTNYPEL 657
L L++ E+L+ LRK+ + + +L T +++ ++ PV P +
Sbjct: 129 LNSLNS--------EFLQLLRKIAINVKEGRQLTTENSSDTSSMTHPVQPSPSV 174
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 19 PVMPPVPDIHMMDKLPFTPLPPYNRIKDKQAKFRKILEEKATKRKVEI----ARPLLELY 74
P PP PD H++D P L +I A+ + + +R +EI RP E+Y
Sbjct: 127 PSKPPHPDSHILDDDPSAMLSYLKKIDPVMAEQWHPRDTRKIRRSLEIYFHTGRPPSEIY 186
Query: 75 ERDRLVESQSK 85
++ S SK
Sbjct: 187 SEQKMKSSGSK 197
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 32.3 bits (70), Expect = 1.4
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 471 DIIAGIVKGHMAENESICSEFEIIAAKALKEPENATELIEQGVYILHAKTVLVEALKERI 530
D + ++ + + + +E I + L+ + E EQ + H K +LVE R+
Sbjct: 842 DALINNLQNQLESTKEVANELTITKERVLQLTNDLQE--EQA--LAHEKDILVERANSRV 897
Query: 531 LVQINIISNLLEMTSLSSDHVKSNTRTVNWLKDIKPIFEKNAAAYET---FKADMEESLL 587
V +S+L +++ + + +L K E++ A +T + +D+ +L
Sbjct: 898 EVVHERLSSLENQVTIADEKYE-------FLYAEKQSIEEDLANKQTEISYLSDLSSTLE 950
Query: 588 GKIAYLNK-EVTDMTPYLEL----LDNMDDVNHTLEYLEYLRKLVH 628
K++ + K E T + Y EL L+ M D H+ ++L L K ++
Sbjct: 951 KKLSSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAIN 996
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.9 bits (69), Expect = 1.8
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 339 SHISQRLMPIEQYLKIPYNYDALPVVYNEWLHKDGHERLQQQLNIVFKPLNQYVEKLRQE 398
S + R+ EQ +++ Y L + ++ +K R++QQ L +YVE++ QE
Sbjct: 490 SMMVSRMKTQEQSIELTRLYKQLQDIEEDYENK--LMRMEQQWREDVDQLQEYVEEITQE 547
Query: 399 YNMLYGTPAKEALEKFINETEAFEELRNKIK--YYQDIDSNITAVLENE 445
KE L K E++ +EE+ K++ ++I+ + ENE
Sbjct: 548 LQ-----DTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENE 591
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 31.1 bits (67), Expect = 3.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 372 DGHERLQQQLNIVFKPLNQYVEKLRQEYNMLYGTPAKEALEKFINETEAFEELRNKIKYY 431
D + L QQL + +N Y+E Y E++ +F N + F ELR +I Y
Sbjct: 616 DTRQELNQQLRVA---VNGYIETAVIHYTECLSIGNLESITEFQNRIQKFPELRQQISLY 672
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 4.2
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 2901 REKLIVQGAANRAAL-------KQVEDDILRTLQETKGDILEDESAIEVLDSSKNLAIDI 2953
R L+ Q AN AAL KQ +D+ R L+E K +I ++ + AI+
Sbjct: 96 RANLLKQSEANNAALESLNNSIKQKQDEYQRKLEELKKEIEYAKTKSLFHEREAQDAIET 155
Query: 2954 MKKQEASLETETIIEK 2969
MKK + ++ I++K
Sbjct: 156 MKKMKRDVKNSPIMKK 171
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 30.7 bits (66), Expect = 4.2
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 613 VNHTLEYLEYLRKLVHRLHDCDKLVTWINNEETTFKFPVTNYPELE-ELKEFIIPFYSLV 671
+N+ E + YL V +L K + +N+++ ++ T ELE ++KE + SL
Sbjct: 1071 INNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLT 1130
Query: 672 YLVHRWKRSYYTWMDGPFEYLDHNQIEQDHDFYYKEFLKIS--KNYRNKIKQQIAEGVEK 729
+ + D +Y++ +I ++ LK+S +NY+ K EG++
Sbjct: 1131 KELENKEEKCQNLSDASLKYIELQEIHEN------LLLKVSDLENYKKKY-----EGLQL 1179
Query: 730 RFQGLVD 736
+GL D
Sbjct: 1180 DLEGLKD 1186
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 30.7 bits (66), Expect = 4.2
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 546 LSSDHVKSNTRTVNWLKDIKPIFEKNAAAYETFKADMEESLLGKIAYLNKEVTDMTPYLE 605
+S+D + +T +W+ + + + A E F + E +L +++ NKE + LE
Sbjct: 1 MSADKFRDSTHYRDWIFTEEDLSKTRAKVNEKFTNIVRERMLEELSLQNKEAS-----LE 55
Query: 606 LLDNMDDVNHTLEYLEYLRKLVHRLHDCDKLVTWINNEETTF--KFPVTNYPELEELKEF 663
+L V LE + Y ++ L L T I + F +F + N + E
Sbjct: 56 VLPPTLTVEEELELVNYYSFQLNALSSALSLPTHIRSTAILFFKRFYLIN--SVMEYSPK 113
Query: 664 IIPFYSL 670
II F SL
Sbjct: 114 IISFTSL 120
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 30.7 bits (66), Expect = 4.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 356 YNYDALPVVYNEWLHKDGHERLQQQLNIVFKPLNQYVEK 394
YN+D V Y +W+ + E ++QLN VF + +K
Sbjct: 30 YNFD-YDVAYTKWIQQKSREEAEKQLNNVFSQFSSKEDK 67
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 30.7 bits (66), Expect = 4.2
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 307 VLNVCLDFDGEFIYDPTLETIYEVFHNIADAISHI-SQRLMPI 348
V N+C+ + + YDP+ YE++ N + ++ + +QR++ +
Sbjct: 151 VANLCIQYGSQIFYDPSFRNAYELWSNPSVLLAFLKAQRVLVV 193
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 30.3 bits (65), Expect = 5.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 1100 ESLNTHKLSELQAFHSELTKQLNETVAVIRRTDLTK 1135
ES+ L EL+ FHS L+ NET +I T ++K
Sbjct: 89 ESITPSSLKELKPFHSTLSAFTNETGGIIDDTIISK 124
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 30.3 bits (65), Expect = 5.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 362 PVVYNEWLHKDGHERLQQQLNIVFKPLNQYVEKL 395
PV NE LHK+ E L ++N K N++ EKL
Sbjct: 6 PVRPNEALHKEALEELDAKINEAKKRFNEHKEKL 39
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 29.9 bits (64), Expect = 7.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 416 NETEA-FEELRNKIKYYQDIDSNITAVLENEYFNCAVVCQL 455
+E EA F+E+R K+K +QD ++I + L + Y A+ L
Sbjct: 403 SEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 443
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 29.5 bits (63), Expect = 9.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1910 TTDKLFIYDTIFYGAIAATTDIYDQARENLRPTPAKSHYI 1949
T DK+ I D + +IA++TD+ RE + P +HY+
Sbjct: 272 TPDKIAILDLLATQSIASSTDMLTAFRELTQDFPIYAHYL 311
>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||Manual
Length = 201
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 1572 MAMSNVMSMIFEVMDLSQASPATVSRCGMIYMESTSLGFMPFYKSWLNTLNP 1623
M ++ V++++F L+ ASP V+ G++ + + F+ Y+SW NP
Sbjct: 1 MKITAVIALLFS---LAAASPIPVADPGVVSVSKSYADFLRVYQSWNTFANP 49
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 29.5 bits (63), Expect = 9.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 306 PVLNVCLDFDGEFIYDPTLETIYEVFHNIADAI-SHISQRLMP 347
P++ + LD D E + + LETIY+V D + S I Q L+P
Sbjct: 875 PLVVIQLDTDNELLVECALETIYQVCALADDFMTSRIRQDLLP 917
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 827
Score = 29.5 bits (63), Expect = 9.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 2026 DEKGEVNQENIKKMMFGCYLDTDSAEGERRYEEI-PSKEVFLNIAVSMLSEYNSMHKAK 2083
DE E+N E +++M FG + D+D AE E+ E SK ++ ++ Y + +A+
Sbjct: 169 DEGEELNDEVVRRMHFGGFEDSD-AENEKEGEGAHKSKREVMSEIIAKSKHYKAERQAE 226
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,867
Number of Sequences: 5004
Number of extensions: 782235
Number of successful extensions: 2272
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2214
Number of HSP's gapped (non-prelim): 74
length of query: 3796
length of database: 2,362,478
effective HSP length: 87
effective length of query: 3709
effective length of database: 1,927,130
effective search space: 7147725170
effective search space used: 7147725170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -