GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001869-TA|BGIBMGA001869-PA|IPR013602|Dynein heavy chain,
N-terminal region 2, IPR011704|ATPase associated with various cellular
activities, AAA-5, IPR004273|Dynein heavy chain
         (3796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30690.1 68417.m04350 translation initiation factor 3 (IF-3) ...    42   0.011
At3g52250.1 68416.m05742 myb family transcription factor contain...    34   1.6  
At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3) ...    34   1.6  
At1g78990.1 68414.m09210 transferase family protein low similari...    33   3.8  
At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putat...    33   5.0  
At3g16620.1 68416.m02124 chloroplast outer membrane protein, put...    33   5.0  
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    32   6.6  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    32   6.6  

>At4g30690.1 68417.m04350 translation initiation factor 3 (IF-3)
           family protein similar to SP|P33319 Translation
           initiation factor IF-3 {Proteus vulgaris}; contains Pfam
           profiles PF00707: Translation initiation factor IF-3,
           C-terminal domain, PF05198: Translation initiation
           factor IF-3, N-terminal domain
          Length = 281

 Score = 41.5 bits (93), Expect = 0.011
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 34  PFTPLPPYNRIKDKQAKFRKILEEKATKRKVEIARPLLELYERDRLVESQSKHIGVLREC 93
           P   +  Y++ + +Q K +K  ++K T+  ++  +    + + D  V  ++       + 
Sbjct: 135 PVVRMMDYSKYRYEQQKRKKEQQKKTTRMDLKELKMGYNIDQHDYSVRMRAAR--KFLQD 192

Query: 94  AEKIKAPPMLKSWERKIRNLIPANLRQSFPTLVEEL-MNESKDEWDRNLHDLAV--KTVI 150
            +K+K    +K  E + RN+    LR+ F T + EL   ESK+  DRNL  + V  K VI
Sbjct: 193 GDKVKVIVNMKGRENEFRNIAIELLRR-FQTEIGELGTEESKNFRDRNLFIVLVPNKEVI 251

Query: 151 RDVPGVPRKRYEEP 164
           R V   P K+ ++P
Sbjct: 252 RKVQEPPPKKKKKP 265


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 1462 PFSGKSMTLKVLSEALSLIHERNQPDGCECTYKVLNPKAVTMGQLYGAFDPISYEWTDGI 1521
            P S K +TL+  S A SL H+ N  +G  C+Y    P+  T G    A  P+S E  +  
Sbjct: 991  PISSKKITLRGCSSANSLQHDGNNSEG--CSYSFDFPRKRTAGADVLAVGPLSPEQINSC 1048

Query: 1522 VAT 1524
            + T
Sbjct: 1049 LRT 1051


>At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3)
           family protein similar to SP|P33319 Translation
           initiation factor IF-3 {Proteus vulgaris}; contains Pfam
           profiles PF00707: Translation initiation factor IF-3,
           C-terminal domain, PF05198: Translation initiation
           factor IF-3, N-terminal domain
          Length = 312

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 34  PFTPLPPYNRIKDKQAKFRKILEEKATKRKVEIARPLLELYERDRLVESQSKHIGVLREC 93
           P   +  Y++ + +Q K +K  ++K T+  ++  +    + + D  V  ++       + 
Sbjct: 139 PVVKMMDYSKYRYEQQKRKKDQQKKTTRMDLKELKMGYNIDQHDYSVRLRAAQ--KFLQD 196

Query: 94  AEKIKAPPMLKSWERKIRNLIPANLRQSFPTLVEELMNE-SKDEWDRNLHDLAV--KTVI 150
            +K+K    +K  E + RN+    LR+ F T + EL  E SK+  DRN+  + V  K +I
Sbjct: 197 GDKVKVIVSMKGRENEFRNIAIELLRR-FQTEIGELATEESKNFRDRNMFIILVPNKEMI 255

Query: 151 RDVPGVPRKR 160
           R     P ++
Sbjct: 256 RKPQEPPTRK 265


>At1g78990.1 68414.m09210 transferase family protein low similarity
           to acetyl CoA: benzylalcohol acetyltransferase Clarkia
           breweri GI:3170250, GI:6166336, Clarkia concinna
           GI:6166326, anthranilate
           N-hydroxycinnamoyl/benzoyltransferase Dianthus
           caryophyllus GI:2239091; contains Pfam profile PF02458
           transferase family
          Length = 455

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 565 KPIFEKNAAAYETFKADMEESLLGKIAYLNKEVTDMTPYLELLDN 609
           KP+   N  AYET K  + E+L+   A+  + VT+ T   E+L N
Sbjct: 54  KPLHFTNTVAYETLKTALAETLVSYYAFAGELVTNPTGEPEILCN 98


>At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putative
            similar to SP|P53037 Phosphatidylserine decarboxylase
            proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
            cerevisiae}; contains Pfam profile PF02666:
            phosphatidylserine decarboxylase
          Length = 635

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 2107 SGNALLVGVGGSGRQSLTRLASTILGQQVFQPEITKSYSVKDWHDDIKLVLRESG 2161
            +G ALL  +G   +     LA    G+Q F+ EI+ S     W+ + KL+L ++G
Sbjct: 53   AGIALLTLIGAEMKFKDKWLACVSFGEQTFRSEISDSTEKPIWNSEKKLLLEKNG 107


>At3g16620.1 68416.m02124 chloroplast outer membrane protein, putative
            similar to chloroplast protein import component Toc159
            [Pisum sativum] GI:8489806, chloroplast outer envelope
            protein 86 [Pisum sativum] GI:599958, GTP-binding protein
            [Pisum sativum] GI:576509
          Length = 1089

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 2751 IQDNSMRWSLLIDPQGQANKW-IKTMEKTNDLQVLKFTDGNYMKVIETCLEYGKPALIDC 2809
            +++  + +S + +  G+ N+  I T E  +DL  LK  D ++ +V +  + YGK A    
Sbjct: 86   VENLKVNYSEIGESHGEVNEQCITTKEADSDLVTLKMNDYDHGEVADADISYGKMASSLD 145

Query: 2810 VLEDVEAPLDPVLLKLTYLQGGKEFIALGDNVIEYHPNFRL 2850
            V+E+ E     +  +   L+ G    +  + V+    N  L
Sbjct: 146  VVENSEKATSNLATEDVNLENGNTHSSSENGVVSPDENKEL 186


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
            weak similarity to 2-phosphoglycerate kinase (GI:467751)
            [Methanothermus fervidus]
          Length = 738

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 2053 ERRYEEIPSKEVFLNIAVSMLSEYNSM-HKAKMTIVLFDYALEHLSKICRILS-MPSGNA 2110
            +RR   + S+E+F+N+    L+EY  + H  +  ++L           CRI     S   
Sbjct: 126  KRRTTVVVSREIFVNVVCDALAEYKYVGHDQRADLIL----------SCRIRERKESVTV 175

Query: 2111 LLVGVGGSGRQSLTRLASTILG 2132
            LL G  G G+ +L+ L  + LG
Sbjct: 176  LLCGTSGCGKSTLSALLGSRLG 197


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 1800 KYLKPLLLIGPTGTGKSFYVQN 1821
            +Y +P+LL+G TGTGK+  VQN
Sbjct: 665  EYNEPVLLVGETGTGKTTLVQN 686


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,867,633
Number of Sequences: 28952
Number of extensions: 3894487
Number of successful extensions: 10308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10279
Number of HSP's gapped (non-prelim): 34
length of query: 3796
length of database: 12,070,560
effective HSP length: 96
effective length of query: 3700
effective length of database: 9,291,168
effective search space: 34377321600
effective search space used: 34377321600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 69 (31.9 bits)