GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001868-TA|BGIBMGA001868-PA|undefined
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   6.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.9  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    25   7.9  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 212 PRGVSTKIKTKVRYQSIKKEKSGSEEDE---HSADERLLG 248
           P G+    +  V Y     EKS  EEDE   HSA+E   G
Sbjct: 171 PSGLEESSEESVLYSEEFYEKSDEEEDEEKSHSAEELEFG 210


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 197 NILIFWVTDNFLMYHPRGVS 216
           +IL+ WV D+FL   PR +S
Sbjct: 71  DILLSWVPDSFLKNRPRDLS 90


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 207 FLMYHPRGVSTKIKTKVRYQSIKKEKSGSEEDEHSADER 245
           FL+ H R    ++KT + ++ ++K+    E+D + AD +
Sbjct: 69  FLIRHDRAKVNRLKTYLSWKEVRKK--AKEQDANPADTK 105


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.139    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,952
Number of Sequences: 5004
Number of extensions: 42084
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 3
length of query: 251
length of database: 2,362,478
effective HSP length: 71
effective length of query: 180
effective length of database: 2,007,194
effective search space: 361294920
effective search space used: 361294920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)