GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001868-TA|BGIBMGA001868-PA|undefined
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886...    31   1.2  

>04_03_0283 +
           13887388-13887573,13887711-13887806,13888517-13888637,
           13888734-13888840,13888949-13889166,13890219-13890396,
           13890492-13890611,13891601-13891687,13892401-13892511,
           13892618-13893439
          Length = 681

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 196 VNILIFWVTDNFLMYHPRGVSTKIKTKVRYQSIKKEKSGSEEDEHSADERL 246
           + IL+ W+   FL+Y+ + VS +++    Y  +  E   SE D   +  RL
Sbjct: 72  LTILLLWIVMIFLVYYIKHVSREVQVFEPYSILGLEPGASESDIKKSYRRL 122


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.139    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,224,415
Number of Sequences: 37544
Number of extensions: 268962
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 1
length of query: 251
length of database: 14,793,348
effective HSP length: 80
effective length of query: 171
effective length of database: 11,789,828
effective search space: 2016060588
effective search space used: 2016060588
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)