GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001868-TA|BGIBMGA001868-PA|undefined
         (251 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24435| Best HMM Match : No HMM Matches (HMM E-Value=.)             166   1e-41
SB_40250| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              29   2.8  
SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)                   29   4.8  
SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)                 28   6.4  

>SB_24435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score =  166 bits (404), Expect = 1e-41
 Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 1/193 (0%)

Query: 48  PRFARRPWLIWFYDTSKQGLGALIIHAANVWLSPHLTGNPCTWYIVNFMLDSTLGLLIIW 107
           P  +R  ++  FYDTSKQG+GA++IH ANV+L+   +G+PCTWY +NF+LDST GL+II+
Sbjct: 15  PSSSRIQYITMFYDTSKQGVGAVVIHFANVFLAGMFSGDPCTWYFINFLLDSTAGLVIIY 74

Query: 108 AGIRLAQHCARVYDIPLINFGEYGKPPMCSAWICQCILYAALATFAKSXXXXXXXXXXXX 167
             I L Q   ++Y I  + FGEYG PP CSAW+ QC+LY  +  F K             
Sbjct: 75  ILISLTQVVVKLYSIDNLRFGEYGTPPRCSAWMGQCVLYTLVVIFEKITIALIVQLQFWE 134

Query: 168 XXXSTLRLSPVSDPRLELAVVMLIIPFFVNILIFWVTDNFLMYHPRGVSTKIKTKVRYQS 227
                +       P++E+A+VMLI+PF  N  +FWV DNFLM   R    +  + ++ + 
Sbjct: 135 SVREFILKPLKGHPKMEVAIVMLIVPFIFNAFMFWVVDNFLMRKKRKSLQESDSNMKVKH 194

Query: 228 IKK-EKSGSEEDE 239
           +++ E   S E+E
Sbjct: 195 LRRPELVKSTEEE 207


>SB_40250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/62 (22%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 183 LELAVVMLIIPFFVNILIFWVTDNFLMYHPRGVSTKIKTKVRYQSIKKEKSGSEEDEHSA 242
           L + V++++I   +N+++F +   ++MY  +       T + Y  ++K K+  +E+  S+
Sbjct: 196 LFMCVMLMLIVLSLNVMLFSLAPQYVMYGSQNYRV-FMTGLIYSIVRKRKTVVDEEYDSS 254

Query: 243 DE 244
           D+
Sbjct: 255 DD 256


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 209 MYHPRGVSTKIKTKVRYQSIKKEKSGSEE-DEHSADERLLGAS 250
           ++H RG  TK + +   +   KEK  SEE DE S DE+ L +S
Sbjct: 164 LFHKRGEVTKPEEEPEEKDEAKEKYESEEKDEGSTDEKDLESS 206


>SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/42 (26%), Positives = 24/42 (57%)

Query: 173 LRLSPVSDPRLELAVVMLIIPFFVNILIFWVTDNFLMYHPRG 214
           +R  P  D +   A++ LI+ F+V+ + +++  N +  +P G
Sbjct: 278 VRPGPRRDGKFTSAILTLIVCFYVSFIPYFIALNIIYLYPHG 319


>SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)
          Length = 567

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 212 PRGVSTKIKTKVRYQSIKKEKSGSEEDEHSADER 245
           PR  S+K KT    +S ++EK   E+D+ +A +R
Sbjct: 439 PRQTSSKTKTSKNKRSKQQEKDKQEQDKQAARKR 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.139    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,163,584
Number of Sequences: 59808
Number of extensions: 303353
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 6
length of query: 251
length of database: 16,821,457
effective HSP length: 80
effective length of query: 171
effective length of database: 12,036,817
effective search space: 2058295707
effective search space used: 2058295707
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)