GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001868-TA|BGIBMGA001868-PA|undefined
         (251 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047015-1|AAH47015.1|  294|Homo sapiens transmembrane protein 1...   192   1e-48

>BC047015-1|AAH47015.1|  294|Homo sapiens transmembrane protein 110
           protein.
          Length = 294

 Score =  192 bits (468), Expect = 1e-48
 Identities = 99/242 (40%), Positives = 139/242 (57%), Gaps = 13/242 (5%)

Query: 15  CSKDALTDTYGWFMQIILAVLAFTCLIGKRFCEPRFARRPWLIWFYDTSKQGLGALIIHA 74
           C   AL  ++G F+Q +L V+AF+ L+ KRF EP+  RRPW IWF DTSKQ +G L IH 
Sbjct: 27  CESGALMHSFGIFLQGLLGVVAFSTLMLKRFREPKHERRPWRIWFLDTSKQAIGMLFIHF 86

Query: 75  ANVWLSPHLTGNPCTWYIVNFMLDSTLGLLIIWAGIRLAQHCARVYDIPLINFGEYGKPP 134
           ANV+L+     +PC+ Y++NF+LD+T+G+L+I+ G+R             + FGEYG P 
Sbjct: 87  ANVYLADLTEEDPCSLYLINFLLDATVGMLLIYVGVRAVSVLVEWQQWESLRFGEYGDPL 146

Query: 135 MCSAWICQCILYAALATFAKSXXXXXXXXXXXXXXXSTLRLSPVSDPRLELAVVMLIIPF 194
            C AW+ QC LY  +  F KS                   L+P+ +P L+LA+VMLI+PF
Sbjct: 147 QCGAWVGQCALYIVIMIFEKS---VVFIVLLILQWKKVALLNPIENPDLKLAIVMLIVPF 203

Query: 195 FVNILIFWVTDNFLM--------YHPRGVS--TKIKTKVRYQSIKKEKSGSEEDEHSADE 244
           FVN L+FWV DNFLM           RG +  ++  +KVRY+     +    E   SAD+
Sbjct: 204 FVNALMFWVVDNFLMRKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADD 263

Query: 245 RL 246
            +
Sbjct: 264 EM 265


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.327    0.139    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,797,093
Number of Sequences: 224733
Number of extensions: 1495142
Number of successful extensions: 3119
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3116
Number of HSP's gapped (non-prelim): 1
length of query: 251
length of database: 73,234,838
effective HSP length: 88
effective length of query: 163
effective length of database: 53,458,334
effective search space: 8713708442
effective search space used: 8713708442
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 64 (29.9 bits)