GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001868-TA|BGIBMGA001868-PA|undefined
         (251 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    28   7.3  
U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    28   7.3  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        28   7.3  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    28   7.3  
Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical p...    27   9.6  

>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 173 LRLSPVSDPRLELAVVMLIIPF 194
           L+L P+ DP L  AV+ML+  F
Sbjct: 298 LKLFPIQDPELRKAVIMLLFNF 319


>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 173 LRLSPVSDPRLELAVVMLIIPF 194
           L+L P+ DP L  AV+ML+  F
Sbjct: 315 LKLFPIQDPELRKAVIMLLFNF 336


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 173 LRLSPVSDPRLELAVVMLIIPF 194
           L+L P+ DP L  AV+ML+  F
Sbjct: 315 LKLFPIQDPELRKAVIMLLFNF 336


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 173 LRLSPVSDPRLELAVVMLIIPF 194
           L+L P+ DP L  AV+ML+  F
Sbjct: 298 LKLFPIQDPELRKAVIMLLFNF 319


>Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 208 LMYHPRGVSTKIKTKVRYQSIKKEKSGSEEDEHSADERL 246
           L+  P G+    K KV  + IK EK  S EDE S+DE +
Sbjct: 3   LLKKPAGLK---KRKVISKRIKIEKKPSSEDEGSSDEEV 38


>Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 208 LMYHPRGVSTKIKTKVRYQSIKKEKSGSEEDEHSADERL 246
           L+  P G+    K KV  + IK EK  S EDE S+DE +
Sbjct: 3   LLKKPAGLK---KRKVISKRIKIEKKPSSEDEGSSDEEV 38


>Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 208 LMYHPRGVSTKIKTKVRYQSIKKEKSGSEEDEHSADERL 246
           L+  P G+    K KV  + IK EK  S EDE S+DE +
Sbjct: 3   LLKKPAGLK---KRKVISKRIKIEKKPSSEDEGSSDEEV 38


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.139    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,107,197
Number of Sequences: 27539
Number of extensions: 229399
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 7
length of query: 251
length of database: 12,573,161
effective HSP length: 80
effective length of query: 171
effective length of database: 10,370,041
effective search space: 1773277011
effective search space used: 1773277011
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)