GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001868-TA|BGIBMGA001868-PA|undefined
         (251 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 140 ICQCILYAALATF 152
           +C C +YA+L  F
Sbjct: 369 VCMCFIYASLLEF 381


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 140 ICQCILYAALATF 152
           +C C +YA+L  F
Sbjct: 338 VCMCFIYASLLEF 350


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 140 ICQCILYAALATF 152
           +C C +YA+L  F
Sbjct: 389 VCMCFIYASLLEF 401


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 140 ICQCILYAALATF 152
           +C C +YA+L  F
Sbjct: 338 VCMCFIYASLLEF 350


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.139    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,687
Number of Sequences: 429
Number of extensions: 2680
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 251
length of database: 140,377
effective HSP length: 56
effective length of query: 195
effective length of database: 116,353
effective search space: 22688835
effective search space used: 22688835
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)