GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001868-TA|BGIBMGA001868-PA|undefined
         (251 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    28   5.2  
At1g74130.2 68414.m08585 rhomboid family protein contains Pfam p...    27   9.2  
At1g74130.1 68414.m08586 rhomboid family protein contains Pfam p...    27   9.2  

>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 220 KTKVRYQSIKKEKSGSEEDEHSADERLLGA 249
           KTK     +K E S  EED+ S+DE +  A
Sbjct: 77  KTKETPSKLKDESSSEEEDDSSSDEEIAPA 106


>At1g74130.2 68414.m08585 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 296

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 50  FARRPWLIWFYDTSKQGLGALIIHAANVWLSPHLTGNPCTWYIVNFML 97
           F +R W  W    +    G +I +AA V+    + G    W + NFML
Sbjct: 102 FQKRGWKSWINGANGVVFGLVIANAA-VFTMWRVLGKDNMWMVKNFML 148


>At1g74130.1 68414.m08586 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 322

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 50  FARRPWLIWFYDTSKQGLGALIIHAANVWLSPHLTGNPCTWYIVNFML 97
           F +R W  W    +    G +I +AA V+    + G    W + NFML
Sbjct: 102 FQKRGWKSWINGANGVVFGLVIANAA-VFTMWRVLGKDNMWMVKNFML 148


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.139    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,870,159
Number of Sequences: 28952
Number of extensions: 220080
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 3
length of query: 251
length of database: 12,070,560
effective HSP length: 79
effective length of query: 172
effective length of database: 9,783,352
effective search space: 1682736544
effective search space used: 1682736544
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)