Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34600| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_26887| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)                     32   0.49 
SB_4988| Best HMM Match : Upf2 (HMM E-Value=3.3)                       28   7.9  
SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032)             28   7.9  
SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_34600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 38  IEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 92
           +E ++ E DTLQ+ AL F C++ E+KR N ++ + +  A + IK+PV P+ +L E
Sbjct: 77  LEREIHENDTLQSFALNFGCTMEEIKRANNLYSEQDFHALQMIKIPVQPHGLLAE 131


>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2102

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/52 (26%), Positives = 32/52 (61%)

Query: 42  VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTEL 93
           +QE DTLQ +A+++   + +++R+N++   + ++  + IK+P+   S    L
Sbjct: 623 LQESDTLQGLAIKYGVPMEDIRRVNKLWASDSLYILKIIKIPIKTESDFASL 674


>SB_26887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 3   SGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQ 49
           S DD +  +V+   +ND+N + + Q+  I  +EH +E +++ GD ++
Sbjct: 216 SSDDELEIEVLEKSRNDENEKVEKQIELIHEKEH-VEPEMRHGDQME 261


>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
          Length = 870

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 39  EAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 92
           E +V   DTL  IALRF  + +EL R+N++     +F  + I VP    S LTE
Sbjct: 109 EKEVTNSDTLPKIALRFDTTPSELTRLNRL-TSRMLFPGQVIFVP--NKSALTE 159


>SB_4988| Best HMM Match : Upf2 (HMM E-Value=3.3)
          Length = 203

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 38  IEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEI 74
           I   + E  TLQ ++LR +CS   +   N + K+NE+
Sbjct: 79  IADMLSENWTLQYLSLRLHCSKGVVALANALKKNNEL 115


>SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032)
          Length = 614

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 38  IEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEI 74
           I   + E  TLQ ++LR +CS   +   N + K+NE+
Sbjct: 436 ITDMLSENWTLQDLSLRLHCSEGVVALANALKKNNEL 472


>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 27  QLYKIKPQEHFIEAQVQEGDTLQAIALRF 55
           QLY + P E  IE   +  D LQA  +R+
Sbjct: 173 QLYSLLPSEFRIEVLCKNSDVLQAAVIRY 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,198,646
Number of Sequences: 59808
Number of extensions: 251747
Number of successful extensions: 697
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 11
length of query: 240
length of database: 16,821,457
effective HSP length: 80
effective length of query: 160
effective length of database: 12,036,817
effective search space: 1925890720
effective search space used: 1925890720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)