GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
         (240 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.2  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    22   3.7  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    22   3.7  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    22   3.7  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   3.7  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   3.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 107 KQTP-KSIQQLLQSNGIPQLHQSSLPQKEEKDY 138
           K+ P KS +Q+L   G P L+ +  P     +Y
Sbjct: 829 KEIPAKSAEQILAEGGCPNLYDARKPYVNGSEY 861


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 178 EKIPVEAIVVKELTSHGAD 196
           E+I V  ++ +E+T+H AD
Sbjct: 143 ERISVMNLITEEITTHQAD 161


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 178 EKIPVEAIVVKELTSHGAD 196
           E+I V  ++ +E+T+H AD
Sbjct: 143 ERISVMNLITEEITTHQAD 161


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 178 EKIPVEAIVVKELTSHGAD 196
           E+I V  ++ +E+T+H AD
Sbjct: 143 ERISVMNLITEEITTHQAD 161


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 10  YDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEG 45
           Y   N+ K   +    IQ+Y IKP+E      V+ G
Sbjct: 129 YKRSNDLKTLLSNLESIQIYSIKPKERNSNHWVRSG 164


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 10  YDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEG 45
           Y   N+ K   +    IQ+Y IKP+E      V+ G
Sbjct: 85  YKRSNDLKTLLSNLESIQIYSIKPKERNSNHWVRSG 120


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,346
Number of Sequences: 317
Number of extensions: 1622
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 114,650
effective HSP length: 55
effective length of query: 185
effective length of database: 97,215
effective search space: 17984775
effective search space used: 17984775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)