Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.80
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.8
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 3.2
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 26 4.3
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 26 5.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 7.4
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 25 7.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.8
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 142 CNAVIMNSTLASSVAPYSDVEPAEQVT---EDTQ---LLPNKEKI 180
CN++++NSTL+S + P D + +V ED L PNK K+
Sbjct: 1089 CNSIVINSTLSSIIVPCYDRPISSRVNSIIEDIARIGLAPNKVKL 1133
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 130 LPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVEAIVVKE 189
+ + E D V+M ++ YS EP EQ Q NK+ + V+ + +
Sbjct: 39 IKKAHELSVLCDAKVVVMIFDSKNACHVYSSEEPEEQRDALLQKFLNKDFVTVDPLRIAS 98
Query: 190 LTSHGA 195
+T++ A
Sbjct: 99 VTTYSA 104
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 107 KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDY 138
K+ K + + + S IP+LH+ S+ E +D+
Sbjct: 155 KKLKKDVDERVVSKDIPKLHRDSVESPESQDW 186
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 8 ISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQ 67
I V+NN K + D+Q+++I PQ + I R++ + + +NQ
Sbjct: 208 IMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQ 267
Query: 68 IH 69
++
Sbjct: 268 LY 269
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 62 LKRINQIHKDNEIFARRTIKVPVTPYSVLTELIXXXXXXXXXXXXKQTPKSIQQLLQSNG 121
L IN+ ++ E + T +P+ P +L + I IQ L +NG
Sbjct: 82 LSIINKEQREEERYVFSTDSIPIIPDFLLEKQISTNEPFTDAYVEYMRASLIQLLNITNG 141
Query: 122 IPQLHQ 127
+P + Q
Sbjct: 142 LPLIEQ 147
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 6 DLISYDVMNNKKN--DDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAE 61
D + D+ N K N D+ GRS +I+ QE IE +TL C I+E
Sbjct: 497 DGLQKDLKNTKGNLDDEIGRSAFLKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISE 554
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 133 KEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNK 177
++ K YA+ + V + L S ++P V P ++ +T+ +P+K
Sbjct: 347 EKNKPYALRTDEVDNDRILPSVLSPRDRVNPVMKIGPETKPVPSK 391
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 2 HSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRF 55
+S +L S + NK N S + L KP E + +EG L+ I F
Sbjct: 731 YSVPELRSSESNQNKAGSINTGSAVNLVSSKPGEQKVHIMYKEGHKLRRIYKMF 784
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 120 NGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASS 154
N PQL +S+ QK ++ I +++NST +S
Sbjct: 937 NAFPQLEKSTTLQKSCTNFCILILQLLLNSTATAS 971
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,063
Number of Sequences: 5004
Number of extensions: 36328
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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